taxid,rank,organism_name,names_from_pubmed,pubmed_paper_count,source_pubmed,source_chembl,source_hed,lineage_names,lineage_ranks,organism_type,human_infection_count,human_disease_count,clinical_count,pathogen_count,case_report_count,human_evidence_level,human_evidence_score,chembl_target_count,chembl_target_ids,chembl_target_names,chembl_target_types,relevant_drugs,effective_drugs,drug_data_available_in_checkpoint,target_mode_of_action,ncbi_metadata_file,strain_count,strains,isolate_identifiers,biosample_acc,bioproject_acc,asm_acc,wgs_master_acc,collection_date,geo_loc_name,host,host_disease,isolation_source,serovar
46125,species,Abiotrophia defectiva,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Abiotrophia; Abiotrophia defectiva,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,1,45,MEDIUM,13.532701924328329,0,,,,,,False,,,,,,,,,,,,,,,
2148,species,Acholeplasma laidlawii,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma; Acholeplasma laidlawii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,1,0,LOW,7.6246189861593985,1,CHEMBL612823,Acholeplasma laidlawii,ORGANISM,,,False,,,,,,,,,,,,,,,
32002,species,Achromobacter denitrificans,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; Achromobacter denitrificans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,5,LOW,5.2574953720277815,0,,,,,,False,,,,,,,,,,,,,,,
72557,species,Achromobacter ruhlandii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; Achromobacter ruhlandii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
85698,species,Achromobacter xylosoxidans,2,29,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; Achromobacter xylosoxidans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,2,2.0,8,62,MEDIUM,28.40595965263444,1,CHEMBL5291652,Achromobacter xylosoxidans,ORGANISM,,,False,,,,,,,,,,,,,,,
107673,subspecies,Acinetobacter anitratus,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter calcoaceticus; Acinetobacter calcoaceticus subsp. anitratus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species; subspecies,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL612453,Acinetobacter calcoaceticus subsp. anitratus,ORGANISM,,,False,,,,,,,,,,,,,,,
470,species,Acinetobacter baumannii,1,429,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,73,18,81.0,283,344,HIGH,68.9514314126819,12,CHEMBL614425 | CHEMBL5153 | CHEMBL1075159 | CHEMBL1255143 | CHEMBL1667700 | CHEMBL1667701 | CHEMBL1681612 | CHEMBL2233620 | CHEMBL3885669 | CHEMBL4295546 | CHEMBL4295954 | CHEMBL4523937,"Acinetobacter baumannii | Beta-lactamase OXA-58 | Beta-lactamase | Metallo-beta-lactamase | Beta-lactamase ADC-33 | ADC-11 | QacEdelta1 SMR family efflux pump | Extended-spectrum beta-lactamase SHV-48 | Beta-lactamase OXA-23 | Penicillin-binding protein 1B | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)",ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance | cell_wall_biosynthesis | membrane_function,,,,,,,,,,,,,,
202950,species,Acinetobacter baylyi,1,8,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter baylyi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,9,0,LOW,17.986816161322505,1,CHEMBL4630663,Acinetobacter baylyi,ORGANISM,,,False,,,,,,,,,,,,,,,
471,species,Acinetobacter calcoaceticus,1,6,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter calcoaceticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,6,1,3.0,11,16,MEDIUM,27.893417453137086,2,CHEMBL614426 | CHEMBL5223041,Acinetobacter calcoaceticus | Beta-lactamase,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
280145,species,Acinetobacter colistiniresistens,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter colistiniresistens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1255681,species,Acinetobacter genospecies,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter genospecies,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
106649,species,Acinetobacter guillouiae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter guillouiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
40214,species,Acinetobacter johnsonii,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter johnsonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,5,1,LOW,15.72037011494433,1,CHEMBL6195062,Acinetobacter johnsonii,ORGANISM,,,False,,,,,,,,,,,,,,,
40215,species,Acinetobacter junii,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter junii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,7,7,LOW,15.249237972318795,1,CHEMBL6066641,Acinetobacter junii,ORGANISM,,,False,,,,,,,,,,,,,,,
28090,species,Acinetobacter lwoffii,1,8,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter lwoffii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,2,0.0,5,11,MEDIUM,19.133990016605043,1,CHEMBL613778,Acinetobacter lwoffii,ORGANISM,,,False,,,,,,,,,,,,,,,
106654,species,Acinetobacter nosocomialis,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter nosocomialis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,4,1,0.0,4,2,LOW,17.66299504225485,2,CHEMBL4888464 | CHEMBL5223042,Acinetobacter genomosp. 13TU | Beta-lactamase,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
134533,species,Acinetobacter parvus,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter parvus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
48296,species,Acinetobacter pittii,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter pittii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,0,2.0,3,6,LOW,15.469055686663426,5,CHEMBL1667675 | CHEMBL1667676 | CHEMBL1667677 | CHEMBL3140321 | CHEMBL5223043,ADC-14 protein | ADC-16 protein | ADC-18 protein | Acinetobacter pittii | Beta-lactamase,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
2053287,species,Acinetobacter pseudolwoffii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter pseudolwoffii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
108981,species,Acinetobacter schindleri,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter schindleri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,0,,,,,,False,,,,,,,,,,,,,,,
1530123,species,Acinetobacter seifertii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter seifertii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,1.0,1,0,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
202956,species,Acinetobacter towneri,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter towneri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
108980,species,Acinetobacter ursingii,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter ursingii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,3,LOW,7.6246189861593985,1,CHEMBL6195449,Acinetobacter ursingii,ORGANISM,,,False,,,,,,,,,,,,,,,
718,species,Actinobacillus equuli,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus equuli,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,2,LOW,5.2574953720277815,0,,,,,,False,,,,,,,,,,,,,,,
719,species,Actinobacillus hominis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus hominis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
720,species,Actinobacillus lignieresii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus lignieresii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,1.0,1,0,LOW,11.289781913656018,0,,,,,,False,,,,,,,,,,,,,,,
67855,species,Actinobacillus muris,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Muribacter; Muribacter muris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
715,species,Actinobacillus pleuropneumoniae,1,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus pleuropneumoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,19.0,9,3,MEDIUM,20.97012591487794,1,CHEMBL614603,Actinobacillus pleuropneumoniae,ORGANISM,,,False,,,,,,,,,,,,,,,
716,species,Actinobacillus suis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus suis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,1,2,LOW,10.802672816507345,0,,,,,,False,,,,,,,,,,,,,,,
202789,species,Actinobaculum massiliae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinobaculum; Actinobaculum massiliense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
59505,species,Actinobaculum schaalii,2,6,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinotignum; Actinotignum schaalii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,8,LOW,7.742402021815781,0,,,,,,False,,,,,,,,,,,,,,,
132933,species,Actinomyces funkei,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia funkei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
52769,species,Actinomyces gerencseriae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces gerencseriae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,3,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
55565,species,Actinomyces graevenitzii,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces graevenitzii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,6,LOW,9.80609520652748,0,,,,,,False,,,,,,,,,,,,,,,
1659,species,Actinomyces israelii,2,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces israelii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,2,5.0,1,70,MEDIUM,21.04552323403788,1,CHEMBL614976,Actinomyces israelii,ORGANISM,,,False,,,,,,,,,,,,,,,
1655,species,Actinomyces naeslundii,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces naeslundii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,2,6,LOW,13.507397180639972,1,CHEMBL614975,Actinomyces naeslundii,ORGANISM,,,False,,,,,,,,,,,,,,,
544580,species,Actinomyces oris,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces oris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,0,3,LOW,4.68213122712422,0,,,,,,False,,,,,,,,,,,,,,,
1661,species,Actinomyces pyogenes,2,28,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Trueperella; Trueperella pyogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,2.0,1,3,LOW,11.443703995928276,1,CHEMBL612637,Trueperella pyogenes,ORGANISM,,,False,,,,,,,,,,,,,,,
103621,species,Actinomyces urogenitalis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces urogenitalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,0,,,,,,False,,,,,,,,,,,,,,,
1656,species,Actinomyces viscosus,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces viscosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,2.0,0,4,LOW,11.431281475929715,1,CHEMBL613078,Actinomyces viscosus,ORGANISM,,,False,,,,,,,,,,,,,,,
1445614,species,Actinotignum sanguinis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinotignum; Actinotignum sanguinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
190146,species,Actinotignum urinale,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinotignum; Actinotignum urinale,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
119206,species,Aerococcus sanguinicola,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Aerococcus; Aerococcus sanguinicola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,3,LOW,9.651944526700222,0,,,,,,False,,,,,,,,,,,,,,,
1376,species,Aerococcus urinae,1,7,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Aerococcus; Aerococcus urinae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,7,31,MEDIUM,20.300695260935303,0,,,,,,False,,,,,,,,,,,,,,,
1377,species,Aerococcus viridans,1,12,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Aerococcus; Aerococcus viridans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,0,0.0,8,13,MEDIUM,22.41407852564124,1,CHEMBL5465464,Aerococcus viridans,ORGANISM,,,False,,,,,,,,,,,,,,,
1114880,species,Aeromonas australiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas australiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
648,species,Aeromonas caviae,2,14,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas caviae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,12,8,4.0,14,14,MEDIUM,36.318648193336266,2,CHEMBL5438 | CHEMBL613786,IMP-19 | Aeromonas caviae,SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
196024,species,Aeromonas dhakensis,2,11,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas dhakensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,2,4.0,10,9,MEDIUM,27.97381202477065,0,,,,,,False,,,,,,,,,,,,,,,
502790,species,Aeromonas diversa,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas diversa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
73010,species,Aeromonas encheleia,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas encheleia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
29489,species,Aeromonas enteropelogenes,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas enteropelogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,1,CHEMBL6195100,Aeromonas enteropelogenes,ORGANISM,,,False,,,,,,,,,,,,,,,
649,species,Aeromonas eucrenophila,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas eucrenophila,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
644,species,Aeromonas hydrophila,1,121,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas hydrophila,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,33,26,16.0,62,89,HIGH,54.87486268687799,3,CHEMBL612509 | CHEMBL1169593 | CHEMBL3885662,Aeromonas hydrophila | Metallo-beta-lactamase type 2 | Beta-lactamase,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
650,species,Aeromonas jandaei,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas jandaei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,2.0,0,1,LOW,7.284820912568604,0,,,,,,False,,,,,,,,,,,,,,,
651,species,Aeromonas media,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas media,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
70856,species,Aeromonas popoffii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas popoffii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
645,species,Aeromonas salmonicida,1,11,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas salmonicida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,4.0,12,1,MEDIUM,23.174521442472223,1,CHEMBL613787,Aeromonas salmonicida,ORGANISM,,,False,,PDG000000077.172.metadata.tsv,714.0,A449 | 01-B526 | AS03 | 34mel | NBRC 13784 | 2004-05MF26 | 2009-144K3 | CIP 103209 | JF3224 | Y567,"A449,""CP000644"" | 01-B526,""AGVO"" | AMQG,""AS03"" | 34mel,""DSM:12609"" | NBRC 13784 | 2004-05MF26,""SRS839383"" | 2009-144K3,""SRS839083"" | CIP 103209,""CIP103209_sam"",""ERS541009"" | JF3224 | Y567",SAMN02603664 | SAMN02469939 | SAMN02470909 | SAMN03322533 | SAMD00000014 | SAMN03120845 | SAMN03120844 | SAMEA2752412 | SAMN03295755 | SAMN03395036,PRJNA16723 | PRJNA71855 | PRJNA175472 | PRJNA198485 | PRJDB242 | PRJNA264317 | PRJEB7036,GCA_000196395.1 | GCA_000234845.2 | GCA_000315855.2 | GCA_000447435.2 | GCA_000647955.1 | GCA_000786805.1 | GCA_000786795.1 | GCA_000820065.1 | GCA_000931985.2 | GCA_001466435.1,AGVO00000000.1 | AMQG00000000.2 | ARYZ00000000.2 | BAWQ00000000.1 | JRYW00000000.1 | JRYV00000000.1 | CDDW00000000.1 | JXTA00000000.1 | JZTG00000000.1,2006 | 1988 | 2004 | 2009,"South Korea | Argentina: Matanza River, Buenos Aires | Canada: New Brunswick | Switzerland | India",crucian carp (Carassius carassius) | fish | wild brown trout,,extremely polluted river water | sick fish | wild brown trout fished in a prealpine river,
652,species,Aeromonas schubertii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas schubertii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
218936,species,Aeromonas simiae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas simiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
646,species,Aeromonas sobria,1,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas sobria,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,4,1.0,8,6,LOW,26.930281730379853,1,CHEMBL614400,Aeromonas sobria,ORGANISM,,,False,,PDG000000082.26.metadata.tsv,27.0,CECT 4245 | 08005 | JF2635 | TM12 | TM18 | PAQ091014-19 | PAQ091014-5 | ARS-145-14 | 2014-10509-27-20 | CHT-30,"CECT 4245,""CECT4245_sam"",""ERS541005"" | 08005 | JF2635 | AEROsobri_TM12,""TM12"" | AEROsobri_TM18,""TM18"" | PAQ091014-19,""SRS2335070"" | PAQ091014-5,""SRS2335066"" | ARS-145-14,""SRS2335055"" | 2014-10509-27-20,""SRS2335061"" | CHT-30,""SRS6742063""",SAMEA2752408 | SAMN05828312 | SAMN04100937 | SAMN07490922 | SAMN07491056 | SAMN07312777 | SAMN07312774 | SAMN07312750 | SAMN07312741 | SAMN11952138,PRJEB7040 | PRJNA344548 | PRJNA296590 | PRJNA397895 | PRJNA391781 | PRJNA546108,GCA_000820145.1 | GCA_001858225.1 | GCA_002843345.1 | GCA_002843445.1 | GCA_002843435.1 | GCA_006243235.1 | GCA_006243315.1 | GCA_006246215.1 | GCA_006246595.1 | GCA_008086875.1,CDBW00000000.1 | MKFU00000000.1 | LJZX00000000.1 | NQML00000000.1 | NQMM00000000.1 | NKWB00000000.1 | NKWE00000000.1 | NKXA00000000.1 | NKXJ00000000.1 | VEMU00000000.1,2008-10-25 | 2001 | 2015-05 | 2018-07,"China: Xiamen, Fujian | Switzerland | Canada: Lake Prime-Huron, Quebec | Peru:Lima",bullfrog | Perca fluviatilis | Salvelinus fontinalis | Oncorhynchus mykiss | fish,,liver | intestine | spleen | heart,
633417,species,Aeromonas taiwanensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas taiwanensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
654,species,Aeromonas veronii,1,23,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas; Aeromonas veronii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,10,7,6.0,18,18,MEDIUM,37.38835988934226,2,CHEMBL3562177 | CHEMBL6195064,Beta-lactamase | Aeromonas veronii,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,PDG000000076.205.metadata.tsv,1598.0,B565 | AMC35 | AER39 | AMC34 | AER397 | Hm21 | ARB3 | CECT 4257 | CIP 107763 | CECT 4486,"B565,""CP002607"" | 71519,""AMC35"" | 71513,""AER39"" | 71515,""AMC34"" | 71517,""AER397"" | ATFB,""Hm21"" | ARB3,""amoebae resistant bacterium ARB3"" | CECT 4257,""CECT4257_sam"",""ERS541001"" | CIP 107763,""CIP107763_sam"",""ERS540998"" | CECT 4486,""CECT4486_sam"",""ERS540995""",SAMN02603940 | SAMN02463951 | SAMN02463948 | SAMN02463949 | SAMN02463950 | SAMN02471703 | SAMN03018688 | SAMEA2752404 | SAMEA2752401 | SAMEA2752398,PRJNA63671 | PRJNA71519 | PRJNA71513 | PRJNA71515 | PRJNA71517 | PRJNA205862 | PRJNA260226 | PRJEB7044 | PRJEB7047 | PRJEB7050,GCA_000204115.1 | GCA_000298035.1 | GCA_000297975.1 | GCA_000298015.1 | GCA_000297995.1 | GCA_000464515.2 | GCA_000754905.1 | GCA_000820225.1 | GCA_000820285.1 | GCA_000820365.1,AGWW00000000.1 | AGWT00000000.1 | AGWU00000000.1 | AGWV00000000.1 | JRBE00000000.1 | CDDK00000000.1 | CDDU00000000.1 | CDBU00000000.1,missing | 1996-04 | 2013-01-09,not provided | Turkey | Japan: Tondabayashi,Homo sapiens | Hirudo verbana,,digestive tract | pond water,
714,species,Aggregatibacter actinomycetemcomitans,1,14,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter actinomycetemcomitans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,4,1.0,10,35,MEDIUM,26.1820525555426,1,CHEMBL614406,Aggregatibacter actinomycetemcomitans,ORGANISM,,,False,,,,,,,,,,,,,,,
739,species,Aggregatibacter segnis,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter segnis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,4,LOW,1.6094379124341005,1,CHEMBL6195102,Aggregatibacter segnis,ORGANISM,,,False,,,,,,,,,,,,,,,
362,species,Agrobacterium radiobacter,2,11,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium radiobacter,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,2,1,0.0,5,4,LOW,17.04212595492665,1,CHEMBL6066661,Agrobacterium radiobacter,ORGANISM,,,False,,,,,,,,,,,,,,,
358,species,Agrobacterium tumefaciens,1,22,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium tumefaciens,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,1,5,1.0,43,0,MEDIUM,28.45510966063514,3,CHEMBL612504 | CHEMBL4663 | CHEMBL5865,Agrobacterium tumefaciens | Beta-glucosidase | Transcriptional activator protein TraR,ORGANISM | SINGLE PROTEIN,,,False,rna_transcription,,,,,,,,,,,,,,
239935,species,Akkermansia muciniphila,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia; Akkermansia muciniphila,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; genus; species,Bacteria,0,16,3.0,4,2,MEDIUM,20.418030605247043,1,CHEMBL5465465,Akkermansia muciniphila,ORGANISM,,,False,,,,,,,,,,,,,,,
511,species,Alcaligenes faecalis,1,8,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes; Alcaligenes faecalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,3.0,3,7,LOW,18.22125371925547,1,CHEMBL614433,Alcaligenes faecalis,ORGANISM,,,False,,,,,,,,,,,,,,,
72556,species,Alcaligenes piechaudii,2,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; Achromobacter piechaudii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
28197,species,Aliarcobacter butzleri,2,23,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Aliarcobacter; Aliarcobacter butzleri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL4296552,Aliarcobacter butzleri,ORGANISM,,,False,,,,,,,,,,,,,,,
1652,species,Alloiococcus otitidis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Alloiococcus; Alloiococcus otitis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,1,CHEMBL6195104,Alloiococcus otitis,ORGANISM,,,False,,,,,,,,,,,,,,,
33036,species,Anaerococcus tetradius,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Anaerococcus; Anaerococcus tetradius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,1,CHEMBL614747,Anaerococcus tetradius,ORGANISM,,,False,,,,,,,,,,,,,,,
186733,species,Anaplasma bovis,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; Anaplasma bovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,3,2.0,4,1,LOW,21.53419605316273,0,,,,,,False,,,,,,,,,,,,,,,
1562740,species,Anaplasma capra,1,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; Anaplasma capra,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,1,1.0,9,0,LOW,22.145699244682174,0,,,,,,False,,,,,,,,,,,,,,,
769,species,Anaplasma centrale,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; Anaplasma centrale,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,4.0,0,0,LOW,5.991464547107982,0,,,,,,False,,,,,,,,,,,,,,,
770,species,Anaplasma marginale,1,8,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; Anaplasma marginale,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,4,35.0,5,0,MEDIUM,25.34859811502723,0,,,,,,False,,,,,,,,,,,,,,,
142058,species,Anaplasma ovis,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; Anaplasma ovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,8.0,7,0,LOW,22.416275849231017,0,,,,,,False,,,,,,,,,,,,,,,
948,species,Anaplasma phagocytophilum,2,86,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; phagocytophilum group; Anaplasma phagocytophilum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,62,56,29.0,68,57,HIGH,60.73506300592681,0,,,,,,False,,,,,,,,,,,,,,,
949,species,Anaplasma platys,2,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma; Anaplasma platys,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,9,4,6.0,10,5,MEDIUM,31.71171024060902,0,,,,,,False,,,,,,,,,,,,,,,
63363,species,Aquifex aeolicus,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Aquificota; Aquificia; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,2,0,LOW,8.788898309344878,0,,,,,,False,,,,,,,,,,,,,,,
28264,species,Arcanobacterium haemolyticum,2,14,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Arcanobacterium; Arcanobacterium haemolyticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,11,26,MEDIUM,21.265547559423894,1,CHEMBL6066643,Arcanobacterium haemolyticum,ORGANISM,,,False,,,,,,,,,,,,,,,
2234,species,Archaeoglobus fulgidus,1,1,True,False,False,root; cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus; Archaeoglobus fulgidus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
603050,species,Arcobacter mytili,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Malaciobacter; Malaciobacter mytili,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
1935204,species,Arcobacter porcinus,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Arcobacter; Arcobacter porcinus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,0,0,LOW,3.295836866004329,0,,,,,,False,,,,,,,,,,,,,,,
28200,species,Arcobacter skirrowii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Aliarcobacter; Aliarcobacter skirrowii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,3,0,LOW,11.325920960271892,0,,,,,,False,,,,,,,,,,,,,,,
544718,species,Arcobacter thereius,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Aliarcobacter; Aliarcobacter thereius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,0,0,LOW,3.295836866004329,0,,,,,,False,,,,,,,,,,,,,,,
95172,species,Arthrobacter flavus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter; Arthrobacter flavus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
409291,species,Arthrobacter humicola,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter; Arthrobacter humicola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
415421,species,Asaia lannensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Acetobacteraceae; Asaia; Asaia lannensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
565,species,Atlantibacter hermannii,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Atlantibacter; Atlantibacter hermannii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,1,CHEMBL6195229,Escherichia hermannii,ORGANISM,,,False,,,,,,,,,,,,,,,
1381,species,Atopobium minutum,2,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium; Atopobium minutum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,1,CHEMBL6195125,Atopobium minutum,ORGANISM,,,False,,,,,,,,,,,,,,,
678932,species,Auritidibacter ignavus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Auritidibacter; Auritidibacter ignavus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
354,species,Azotobacter vinelandii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter group; Azotobacter; Azotobacter vinelandii,no rank; cellular root; domain; kingdom; phylum; class; order; family; subfamily; genus; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
44250,species,Bacillus alvei,2,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Paenibacillaceae; Paenibacillus; Paenibacillus alvei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL613238,Paenibacillus alvei,ORGANISM,,,False,,,,,,,,,,,,,,,
1390,species,Bacillus amyloliquefaciens,1,11,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species subgroup; species,Bacteria,0,1,0.0,11,1,MEDIUM,15.197121971179785,3,CHEMBL5928 | CHEMBL4523941 | CHEMBL4630665,Type II restriction enzyme BamHI | Nitroreductase | Bacillus amyloliquefaciens,SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
1392,species,Bacillus anthracis,1,62,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus anthracis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,29,23,5.0,64,50,HIGH,51.52623193835108,16,CHEMBL4372 | CHEMBL5270 | CHEMBL5271 | CHEMBL5352 | CHEMBL5396 | CHEMBL5751 | CHEMBL613904 | CHEMBL1075045 | CHEMBL1075046 | CHEMBL1075320 | CHEMBL2079847 | CHEMBL2176851 | CHEMBL3102690 | CHEMBL3301396 | CHEMBL3329078 | CHEMBL4295616,Lethal factor | Dihydrofolate reductase | NH(3)-dependent NAD(+) synthetase | Protective antigen | Calmodulin-sensitive adenylate cyclase | Beta-lactamase | Bacillus anthracis | Dihydropteroate synthase | Dihydrodipicolinate synthase | Probable nicotinate-nucleotide adenylyltransferase | Beta-lactamase II | Replicative DNA helicase | Dihydroorotase | Antrax lethal toxin | Inosine-5'-monophosphate dehydrogenase | Type III pantothenate kinase,SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX,,,False,beta_lactam_resistance | folate_metabolism | virulence,,,,,,,,,,,,,,
412384,species,Bacillus aryabhattai,2,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Priestia; Priestia aryabhattai,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,2,0,LOW,7.572502985020385,0,,,,,,False,,,,,,,,,,,,,,,
1452,species,Bacillus atrophaeus,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus atrophaeus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL6195129,Bacillus atrophaeus,ORGANISM,,,False,,,,,,,,,,,,,,,
1396,species,Bacillus cereus,1,115,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus cereus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,24,30,15.0,149,82,HIGH,58.19465943568568,9,CHEMBL613070 | CHEMBL5732 | CHEMBL1293202 | CHEMBL1744488 | CHEMBL4295695 | CHEMBL4739677 | CHEMBL5169213 | CHEMBL5169235 | CHEMBL5291588,Bacillus cereus | Beta-lactamase 1 | Phospholipase C | Metallo-beta-lactamase type 2 | 1-phosphatidylinositol phosphodiesterase | Collagenase ColQ1 | Collagenase ColA | Sphingomyelinase C,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
79880,species,Bacillus clausii,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Shouchella; Shouchella clausii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,5,LOW,10.057409634808383,2,CHEMBL5439 | CHEMBL613906,Beta-lactamase | Shouchella clausii,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
1398,species,Bacillus coagulans,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Heyndrickxia; Heyndrickxia coagulans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,1,LOW,6.186208623900495,2,CHEMBL613816 | CHEMBL2390809,Heyndrickxia coagulans | Proline iminopeptidase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1402,species,Bacillus licheniformis,1,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus licheniformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,1,3.0,11,13,MEDIUM,25.46079828695444,5,CHEMBL612626 | CHEMBL4299 | CHEMBL4215 | CHEMBL5633 | CHEMBL1744487,Bacillus licheniformis | Subtilisin Carlsberg | Alpha-amylase | Beta-lactamase | Regulatory protein BlaR1,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
1404,species,Bacillus megaterium,1,8,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Priestia; Priestia megaterium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,2,0.0,7,3,LOW,19.47378809019584,3,CHEMBL613071 | CHEMBL4295634 | CHEMBL4630872,Priestia megaterium | Tyrosinase | Bifunctional cytochrome P450/NADPH--P450 reductase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
86668,species,Bacillus niacini,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Neobacillus; Neobacillus niacini,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
1648923,species,Bacillus paralicheniformis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus paralicheniformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
1408,species,Bacillus pumilus,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus pumilus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,5,1.0,5,6,LOW,23.2114577084792,1,CHEMBL612429,Bacillus pumilus,ORGANISM,,,False,,,,,,,,,,,,,,,
561879,species,Bacillus safensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus safensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,1,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
1421,species,Bacillus sphaericus,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Lysinibacillus; Lysinibacillus sphaericus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,3,0.0,2,0,LOW,9.65194452670022,1,CHEMBL613863,Lysinibacillus sphaericus,ORGANISM,,,False,,,,,,,,,,,,,,,
1422,species,Bacillus stearothermophilus,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Anoxybacillaceae; Geobacillus; Geobacillus stearothermophilus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,2,0,LOW,9.651944526700222,8,CHEMBL4786 | CHEMBL614957 | CHEMBL4412 | CHEMBL5371 | CHEMBL1075086 | CHEMBL1641342 | CHEMBL3271926 | CHEMBL4523227,Farnesyl diphosphate synthase | Geobacillus stearothermophilus | Alpha-glucosidase | Alpha-amylase | Alanine racemase | Methionine--tRNA ligase | D-alanyl-D-alanine carboxypeptidase DacA | Thermolysin,SINGLE PROTEIN | ORGANISM,,,False,cell_wall_biosynthesis | protein_synthesis,,,,,,,,,,,,,,
1423,species,Bacillus subtilis,1,114,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,7,37,7.0,206,10,HIGH,52.45089696838338,5,CHEMBL359 | CHEMBL4251 | CHEMBL1293248 | CHEMBL2417349 | CHEMBL5169304,Bacillus subtilis | rRNA adenine N-6-methyltransferase | 4'-phosphopantetheinyl transferase ffp | Cell division protein FtsZ | Lipoteichoic acid,ORGANISM | SINGLE PROTEIN | MACROMOLECULE,,,False,,,,,,,,,,,,,,,
1428,species,Bacillus thuringiensis,1,36,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus thuringiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,8,44,4.0,39,1,MEDIUM,42.56530605465367,1,CHEMBL614959,Bacillus thuringiensis,ORGANISM,,,False,,,,,,,,,,,,,,,
492670,species,Bacillus velezensis,1,6,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus velezensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species subgroup; species,Bacteria,0,1,0.0,6,0,LOW,11.808992286956402,0,,,,,,False,,,,,,,,,,,,,,,
1405,species,Bacillus weihenstephanensis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus mycoides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL615075,Bacillus mycoides,ORGANISM,,,False,,,,,,,,,,,,,,,
28111,species,Bacteroides eggerthii,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides eggerthii,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL6195134,Bacteroides eggerthii,ORGANISM,,,False,,,,,,,,,,,,,,,
817,species,Bacteroides fragilis,1,52,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides fragilis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,28,18,40.0,20,74,MEDIUM,49.26974469300725,2,CHEMBL614411 | CHEMBL4840,Bacteroides fragilis | Metallo-beta-lactamase type 2,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
28113,species,Bacteroides heparinolyticus,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella heparinolytica,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,1,CHEMBL6195136,Bacteroides heparinolyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
28132,species,Bacteroides melaninogenicus,2,6,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella melaninogenica,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,3,0,5.0,0,5,LOW,10.920455852163728,1,CHEMBL612236,Prevotella melaninogenica,ORGANISM,,,False,,,,,,,,,,,,,,,
28116,species,Bacteroides ovatus,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides ovatus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,1,2.0,1,3,LOW,9.128696382935672,1,CHEMBL612686,Bacteroides ovatus,ORGANISM,,,False,,,,,,,,,,,,,,,
310297,species,Bacteroides plebeius,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola plebeius,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
310300,species,Bacteroides pyogenes,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides pyogenes,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,6,0,0.0,1,4,LOW,12.85881441145508,0,,,,,,False,,,,,,,,,,,,,,,
818,species,Bacteroides thetaiotaomicron,1,6,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,2,6,2.0,9,6,LOW,25.88823979320014,18,CHEMBL614412 | CHEMBL5303308 | CHEMBL5303309 | CHEMBL5303311 | CHEMBL5303315 | CHEMBL5303316 | CHEMBL5303317 | CHEMBL5303318 | CHEMBL5303321 | CHEMBL5303325 | CHEMBL5303326 | CHEMBL5303327 | CHEMBL5303328 | CHEMBL5303331 | CHEMBL5303332 | CHEMBL5303333 | CHEMBL5303334 | CHEMBL5303336,"Bacteroides thetaiotaomicron | General stress protein | Lipolytic enzyme, G-D-S-L family | Lipase | Nitroreductase-like protein | Nitroreductase | Lipoprotein | Sialic acid-specific 9-O-acetylesterase | Endoglucanase E (EGE) | NADH dehydrogenase/NAD(P)H nitroreductase | Xylanase | Sialic acid-specific acetylesterase | Acetyl esterase (Acetylxylosidase) | Acylhydrolase | Regulatory protein | Acyltransferase | 3-oxo-5-alpha-steroid 4-dehydrogenase",ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
820,species,Bacteroides uniformis,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides uniformis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,1,6,LOW,9.570529135214713,1,CHEMBL612622,Bacteroides uniformis,ORGANISM,,,False,,,,,,,,,,,,,,,
52764,species,Bartonella alsatica,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella alsatica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,3,0,LOW,12.999897393843565,0,,,,,,False,,,,,,,,,,,,,,,
774,species,Bartonella bacilliformis,1,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella bacilliformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,11,2.0,12,2,MEDIUM,30.01305525241241,0,,,,,,False,,,,,,,,,,,,,,,
56426,species,Bartonella clarridgeiae,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella clarridgeiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,5,2,LOW,18.610741872840496,0,,,,,,False,,,,,,,,,,,,,,,
481137,species,Bartonella coopersplainsensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella coopersplainsensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,2,0,LOW,7.572502985020385,0,,,,,,False,,,,,,,,,,,,,,,
807,species,Bartonella elizabethae,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella elizabethae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,10,2.0,5,0,MEDIUM,23.894885186351164,1,CHEMBL6195139,Bartonella elizabethae,ORGANISM,,,False,,,,,,,,,,,,,,,
33045,species,Bartonella grahamii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella grahamii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,5,1.0,7,0,LOW,21.55322963187568,0,,,,,,False,,,,,,,,,,,,,,,
38323,species,Bartonella henselae,2,43,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella henselae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,40,37,12.0,39,224,MEDIUM,54.75744313369357,1,CHEMBL6195140,Bartonella henselae,ORGANISM,,,False,,,,,,,,,,,,,,,
92181,species,Bartonella koehlerae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella koehlerae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,2.0,3,1,LOW,15.890269151739728,0,,,,,,False,,,,,,,,,,,,,,,
291176,species,Bartonella melophagi,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella melophagi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,0,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
270249,species,Bartonella phoceensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella phoceensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,0,LOW,6.068425588244111,0,,,,,,False,,,,,,,,,,,,,,,
481138,species,Bartonella queenslandensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella queenslandensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
803,species,Bartonella quintana,2,18,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella quintana,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,11,13,5.0,21,30,MEDIUM,40.32951699773061,1,CHEMBL6195141,Bartonella quintana,ORGANISM,,,False,,,,,,,,,,,,,,,
270250,species,Bartonella rattimassiliensis,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella rattimassiliensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
395923,species,Bartonella rochalimae,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella rochalimae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,4,1,LOW,17.293668980762558,0,,,,,,False,,,,,,,,,,,,,,,
165694,species,Bartonella schoenbuchensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella schoenbuchensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,1,LOW,6.186208623900495,0,,,,,,False,,,,,,,,,,,,,,,
33046,species,Bartonella taylorii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella taylorii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,2,0,LOW,9.887510598012987,0,,,,,,False,,,,,,,,,,,,,,,
85701,species,Bartonella tribocorum,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella tribocorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,6,1.0,6,0,LOW,21.348024708234835,0,,,,,,False,,,,,,,,,,,,,,,
33047,species,Bartonella vinsonii,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; Bartonella vinsonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,4,0.0,1,1,LOW,11.759785542901756,1,CHEMBL6195143,Bartonella vinsonii,ORGANISM,,,False,,,,,,,,,,,,,,,
959,species,Bdellovibrio bacteriovorus,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Bdellovibrionota; Bdellovibrionia; Bdellovibrionales; Pseudobdellovibrionaceae; Bdellovibrio; Bdellovibrio bacteriovorus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,2,0.0,13,0,MEDIUM,22.928875163817025,0,,,,,,False,,,,,,,,,,,,,,,
1680,species,Bifidobacterium adolescentis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium adolescentis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,1,0,LOW,6.761572768804056,1,CHEMBL6195069,Bifidobacterium adolescentis,ORGANISM,,,False,,,,,,,,,,,,,,,
28025,species,Bifidobacterium animalis,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium animalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL6195146,Bifidobacterium animalis,ORGANISM,,,False,,,,,,,,,,,,,,,
1685,species,Bifidobacterium breve,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium breve,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,2,6,LOW,14.370443397995317,1,CHEMBL5209644,Bifidobacterium breve,ORGANISM,,,False,,,,,,,,,,,,,,,
1689,species,Bifidobacterium dentium,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium dentium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,1,LOW,2.772588722239781,1,CHEMBL6195147,Bifidobacterium dentium,ORGANISM,,,False,,,,,,,,,,,,,,,
302911,subspecies,Bifidobacterium lactis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium animalis; Bifidobacterium animalis subsp. lactis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species; subspecies,Bacteria,1,1,0.0,0,1,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
216816,species,Bifidobacterium longum,1,8,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium longum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,3,0.0,1,7,LOW,16.141812177575634,1,CHEMBL613911,Bifidobacterium longum,ORGANISM,,,False,,,,,,,,,,,,,,,
35833,species,Bilophila wadsworthia,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Bilophila; Bilophila wadsworthia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,4,LOW,9.927204079153444,1,CHEMBL6195148,Bilophila wadsworthia,ORGANISM,,,False,,,,,,,,,,,,,,,
521,species,Bordetella avium,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella avium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,5,2,LOW,14.216292718168056,0,,,,,,False,,,,,,,,,,,,,,,
518,species,Bordetella bronchiseptica,1,28,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella bronchiseptica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,21,11,13.0,28,33,MEDIUM,45.45984409657631,1,CHEMBL612286,Bordetella bronchiseptica,ORGANISM,,,False,,,,,,,,,,,,,,,
103855,species,Bordetella hinzii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella hinzii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,2,4,LOW,12.64767680025421,0,,,,,,False,,,,,,,,,,,,,,,
35814,species,Bordetella holmesii,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella holmesii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,9,6,LOW,18.31086587794516,0,,,,,,False,,,,,,,,,,,,,,,
519,species,Bordetella parapertussis,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella parapertussis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,16,5,MEDIUM,22.19615081454864,0,,,,,,False,,,,,,,,,,,,,,,
520,species,Bordetella pertussis,1,70,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella pertussis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,31,21,28.0,92,68,HIGH,56.76776660161034,4,CHEMBL614434 | CHEMBL5500287 | CHEMBL5500288 | CHEMBL5500292,Bordetella pertussis | Filamentous hemagglutinin | Pertactin autotransporter | Pertussis toxin,ORGANISM | SINGLE PROTEIN | PROTEIN COMPLEX,,,False,virulence,,,,,,,,,,,,,,
123899,species,Bordetella trematum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella; Bordetella trematum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,2,6,LOW,11.8334207470683,0,,,,,,False,,,,,,,,,,,,,,,
1245910,species,Borrelia chilensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; [Borrelia] chilensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
144,species,Borrelia coriaceae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia coriaceae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
29520,species,Borrelia crocidurae,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia crocidurae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,0,LOW,9.903487552536127,0,,,,,,False,,,,,,,,,,,,,,,
40834,species,Borrelia duttonii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia duttonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,0,LOW,6.068425588244111,0,,,,,,False,,,,,,,,,,,,,,,
29519,species,Borrelia garinii,1,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella garinii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,11,12,3.0,11,2,MEDIUM,33.9302089313845,1,CHEMBL6195153,Borrelia garinii,ORGANISM,,,False,,,,,,,,,,,,,,,
140,species,Borrelia hermsii,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia hermsii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,5,1.0,5,4,LOW,25.64757419409777,0,,,,,,False,,,,,,,,,,,,,,,
40835,species,Borrelia hispanica,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia hispanica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,1,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
38876,species,Borrelia lonestari,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Candidatus Borrelia lonestari,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,4,0.0,5,0,LOW,18.18156023811501,0,,,,,,False,,,,,,,,,,,,,,,
100177,species,Borrelia lusitaniae,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; [Borrelia] lusitaniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,4,1.0,4,0,LOW,17.034386382832473,0,,,,,,False,,,,,,,,,,,,,,,
1674146,species,Borrelia mayonii,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella mayonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,5,1.0,10,0,MEDIUM,21.52363785503569,0,,,,,,False,,,,,,,,,,,,,,,
47466,species,Borrelia miyamotoi,1,34,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia miyamotoi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,23,25,0.0,51,7,HIGH,44.322165070043205,0,,,,,,False,,,,,,,,,,,,,,,
44448,species,Borrelia persica,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia persica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,3.0,2,2,LOW,15.80201410398484,0,,,,,,False,,,,,,,,,,,,,,,
44449,species,Borrelia recurrentis,1,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia recurrentis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,4,1.0,9,5,LOW,26.686330909532696,0,,,,,,False,,,,,,,,,,,,,,,
142,species,Borrelia turicatae,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia turicatae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,4,5.0,2,2,LOW,20.54868385224664,0,,,,,,False,,,,,,,,,,,,,,,
62088,species,Borrelia valaisiana,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella valaisiana,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,6,1.0,6,1,LOW,22.04117188879478,0,,,,,,False,,,,,,,,,,,,,,,
683292,species,Borrelia yangtzensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella yangtzensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
139,species,Borreliella burgdorferi,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella burgdorferi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,5,0.0,0,0,LOW,10.920455852163728,1,CHEMBL6195152,Borrelia burgdorferi,ORGANISM,,,False,,,,,,,,,,,,,,,
53254,species,Bosea thiooxidans,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Alloboseaceae; Allobosea; Allobosea thiooxidans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
29522,species,Brachyspira aalborgi,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Brachyspirales; Brachyspiraceae; Brachyspira; Brachyspira aalborgi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,4,LOW,7.847762537473608,0,,,,,,False,,,,,,,,,,,,,,,
159,species,Brachyspira hyodysenteriae,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Brachyspirales; Brachyspiraceae; Brachyspira; Brachyspira hyodysenteriae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,14.0,1,1,MEDIUM,9.574983485564092,1,CHEMBL612491,Brachyspira hyodysenteriae,ORGANISM,,,False,,,,,,,,,,,,,,,
52584,species,Brachyspira pilosicoli,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Brachyspirales; Brachyspiraceae; Brachyspira; Brachyspira pilosicoli,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,4.0,1,7,LOW,13.61608353326738,2,CHEMBL1255145 | CHEMBL6195157,Class D beta-lactamase | Brachyspira pilosicoli,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
375,species,Bradyrhizobium japonicum,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Bradyrhizobium; Bradyrhizobium japonicum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,3,0,LOW,9.704060527839234,0,,,,,,False,,,,,,,,,,,,,,,
1465,species,Brevibacillus laterosporus,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Paenibacillaceae; Brevibacillus; Brevibacillus laterosporus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,1,0,LOW,12.019068140831838,1,CHEMBL6195159,Brevibacillus laterosporus,ORGANISM,,,False,,,,,,,,,,,,,,,
33889,species,Brevibacterium casei,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Brevibacteriaceae; Brevibacterium; Brevibacterium casei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,5,LOW,5.950642552587727,0,,,,,,False,,,,,,,,,,,,,,,
1698,species,Brevibacterium epidermidis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Brevibacteriaceae; Brevibacterium; Brevibacterium epidermidis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL1169591,Brevibacterium epidermidis,ORGANISM,,,False,,,,,,,,,,,,,,,
1703,species,Brevibacterium linens,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Brevibacteriaceae; Brevibacterium; Brevibacterium linens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,1,CHEMBL612511,Brevibacterium linens,ORGANISM,,,False,,,,,,,,,,,,,,,
293,species,Brevundimonas diminuta,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas; Brevundimonas diminuta,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,2,8,LOW,14.164176717029044,1,CHEMBL613920,Brevundimonas diminuta,ORGANISM,,,False,,,,,,,,,,,,,,,
2725493,species,Brevundimonas huaxiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas; Brevundimonas huaxiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
41276,species,Brevundimonas vesicularis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas; Brevundimonas vesicularis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,1,0.0,1,10,MEDIUM,15.726713313499186,0,,,,,,False,,,,,,,,,,,,,,,
235,species,Brucella abortus,1,31,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella abortus,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,35,18,4.0,13,28,MEDIUM,42.94885099425473,1,CHEMBL612494,Brucella abortus,ORGANISM,,,False,,,,,,,,,,,,,,,
36855,species,Brucella canis,1,13,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,18,3,2.0,3,16,MEDIUM,27.89854872701732,0,,,,,,False,,,,,,,,,,,,,,,
120577,species,Brucella ceti,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella ceti,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,3,3,0.0,0,1,LOW,10.39720770839918,0,,,,,,False,,,,,,,,,,,,,,,
29459,species,Brucella melitensis,1,35,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella melitensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,43,13,6.0,10,146,MEDIUM,43.92565977340004,1,CHEMBL6195162,Brucella melitensis,ORGANISM,,,False,,,,,,,,,,,,,,,
444163,species,Brucella microti,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella microti,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,2,1,2.0,2,0,LOW,14.164176717029044,0,,,,,,False,,,,,,,,,,,,,,,
29460,species,Brucella neotomae,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella neotomae,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,0,1,2.0,1,0,LOW,7.742402021815781,1,CHEMBL4296557,Brucella neotomae,ORGANISM,,,False,,,,,,,,,,,,,,,
236,species,Brucella ovis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella ovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,2,0,1.0,2,3,LOW,12.660099320252767,0,,,,,,False,,,,,,,,,,,,,,,
120576,species,Brucella pinnipedialis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella pinnipedialis,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
29461,species,Brucella suis,1,12,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella melitensis group; Brucella suis,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species group; species,Bacteria,13,1,2.0,8,19,MEDIUM,28.814750597712173,1,CHEMBL1075364,Brucella suis,ORGANISM,,,False,,,,,,,,,,,,,,,
179879,species,Burkholderia anthina,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia anthina,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,1,CHEMBL6195074,Burkholderia anthina,ORGANISM,,,False,,,,,,,,,,,,,,,
95486,species,Burkholderia cenocepacia,1,87,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia cenocepacia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,4,1,3.0,35,9,MEDIUM,31.509961698930613,2,CHEMBL1641339 | CHEMBL3301412,PenB class A beta-lactamase | Burkholderia cenocepacia,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
292,species,Burkholderia cepacia,2,89,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia cepacia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,21,9,12.0,64,103,HIGH,49.91815105595803,1,CHEMBL612499,Burkholderia cepacia,ORGANISM,,,False,,,,,,,,,,,,,,,
488447,species,Burkholderia contaminans,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia contaminans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,1.0,1,4,LOW,9.2340568985935,0,,,,,,False,,,,,,,,,,,,,,,
28095,species,Burkholderia gladioli,2,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia gladioli,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,9,9,LOW,18.667540821883893,0,,,,,,False,,,,,,,,,,,,,,,
337,species,Burkholderia glumae,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia glumae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,7,0,LOW,14.79165686307162,1,CHEMBL6195166,Burkholderia glumae,ORGANISM,,,False,,,,,,,,,,,,,,,
13373,species,Burkholderia mallei,2,16,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group; Burkholderia mallei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,9,11,0.0,13,6,MEDIUM,31.80625711847179,1,CHEMBL6195167,Burkholderia mallei,ORGANISM,,,False,,PDG000000143.3.metadata.tsv,153.0,ATCC 23344 | SAVP1 | NCTC 10229 | NCTC 10247 | ATCC 10399 | FMH | JHU | 2002721280 | GB8 horse 4 | PRL-20,"ATCC 23344,""CP000010"" | CP000525,""SAVP1"" | CP000545,""NCTC 10229"" | CP000548,""NCTC 10247"" | AAHN,""ATCC 10399"" | AAIQ,""FMH"" | AAIR,""JHU"" | 2002721280,""AANX"" | AAHO,""GB8 horse 4"" | AAZP,""PRL-20""",SAMN02603987 | SAMN02604034 | SAMN02604032 | SAMN02604033 | SAMN02435893 | SAMN02435848 | SAMN02435849 | SAMN02435874 | SAMN02435863 | SAMN02435865,PRJNA171 | PRJNA13947 | PRJNA13943 | PRJNA13946 | PRJNA13944 | PRJNA13987 | PRJNA13988 | PRJNA16352 | PRJNA13945 | PRJNA19147,GCA_000011705.1 | GCA_000015465.1 | GCA_000015605.1 | GCA_000015625.1 | GCA_000152305.1 | GCA_000152385.1 | GCA_000152405.1 | GCA_000153085.1 | GCA_000167635.1 | GCA_000169875.1,AAHN00000000.2 | AAIQ00000000.2 | AAIR00000000.2 | AANX00000000.2 | AAHO00000000.1 | AAZP00000000.1,2005,Pakistan: Lahore,horse | Equus caballus,,blood of a gelding from the Lahore Polo Club,
87883,species,Burkholderia multivorans,1,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia multivorans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,4,1,1.0,6,7,LOW,21.712479839492527,1,CHEMBL4296558,Burkholderia multivorans,ORGANISM,,,False,,,,,,,,,,,,,,,
28450,species,Burkholderia pseudomallei,2,118,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group; Burkholderia pseudomallei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,40,44,15.0,67,232,HIGH,58.36803016005399,2,CHEMBL3140323 | CHEMBL4630896,Burkholderia pseudomallei | Enoyl-[acyl-carrier-protein] reductase [NADH],ORGANISM | SINGLE PROTEIN,,,False,fatty_acid_biosynthesis,,,,,,,,,,,,,,
95485,species,Burkholderia stabilis,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia stabilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL6195077,Burkholderia stabilis,ORGANISM,,,False,,,,,,,,,,,,,,,
57975,species,Burkholderia thailandensis,1,17,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group; Burkholderia thailandensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,10,6,0.0,16,2,MEDIUM,30.69399054730861,1,CHEMBL4513185,Burkholderia thailandensis,ORGANISM,,,False,,,,,,,,,,,,,,,
60552,species,Burkholderia vietnamiensis,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex; Burkholderia vietnamiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,1,CHEMBL6195076,Burkholderia vietnamiensis,ORGANISM,,,False,,,,,,,,,,,,,,,
544645,species,Butyricimonas virosa,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Odoribacteraceae; Butyricimonas; Butyricimonas virosa,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,2,LOW,6.643789733147672,0,,,,,,False,,,,,,,,,,,,,,,
195,species,Campylobacter coli,1,42,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter coli,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,65,23,8.0,22,17,HIGH,49.25507245136389,1,CHEMBL3301405,Campylobacter coli,ORGANISM,,,False,,,,,,,,,,,,,,,
199,species,Campylobacter concisus,1,11,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter concisus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,3,1.0,5,3,LOW,21.43544659621929,0,,,,,,False,,,,,,,,,,,,,,,
196,species,Campylobacter fetus,2,22,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter fetus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,24,8,3.0,10,62,MEDIUM,38.37237684410462,1,CHEMBL613925,Campylobacter fetus,ORGANISM,,,False,,,,,,,,,,,,,,,
1813019,species,Campylobacter hepaticus,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter hepaticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,3.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
198,species,Campylobacter hyointestinalis,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter hyointestinalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,2.0,2,0,LOW,15.314905006836169,0,,,,,,False,,,,,,,,,,,,,,,
197,species,Campylobacter jejuni,1,233,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,291,88,26.0,193,120,HIGH,73.89967939119158,3,CHEMBL612492 | CHEMBL5013 | CHEMBL2007623,Campylobacter jejuni | CmeA | PglD,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
201,species,Campylobacter lari,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter lari,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,3,1.0,5,2,LOW,23.92035324600729,0,,,,,,False,,,,,,,,,,,,,,,
203,species,Campylobacter rectus,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter rectus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,1.0,2,17,MEDIUM,11.849169104036442,0,,,,,,False,,,,,,,,,,,,,,,
28080,species,Campylobacter upsaliensis,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter upsaliensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,4,1.0,5,1,LOW,22.304304274858808,0,,,,,,False,,,,,,,,,,,,,,,
827,species,Campylobacter ureolyticus,2,6,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter ureolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,2,LOW,5.950642552587727,1,CHEMBL6195173,Campylobacter ureolyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
28188,species,Capnocytophaga canimorsus,1,26,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga canimorsus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,32,3,1.0,8,80,MEDIUM,34.91177973169902,0,,,,,,False,,,,,,,,,,,,,,,
1848903,species,Capnocytophaga canis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga canis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,0,LOW,9.903487552536127,0,,,,,,False,,,,,,,,,,,,,,,
28189,species,Capnocytophaga cynodegmi,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga cynodegmi,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,4,1,0.0,1,1,LOW,12.676076274775909,0,,,,,,False,,,,,,,,,,,,,,,
1018,species,Capnocytophaga ochracea,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga ochracea,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,1,6,LOW,13.036265038014438,1,CHEMBL613339,Capnocytophaga ochracea,ORGANISM,,,False,,,,,,,,,,,,,,,
1019,species,Capnocytophaga sputigena,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga sputigena,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,6,LOW,8.18423477409482,1,CHEMBL6195176,Capnocytophaga sputigena,ORGANISM,,,False,,,,,,,,,,,,,,,
2718,species,Cardiobacterium hominis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium hominis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,4,35,MEDIUM,17.69913408887072,0,,,,,,False,,,,,,,,,,,,,,,
194702,species,Cardiobacterium valvarum,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium; Cardiobacterium valvarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,3,3,LOW,8.317766166719343,0,,,,,,False,,,,,,,,,,,,,,,
2748,species,Carnobacterium divergens,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium; Carnobacterium divergens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,1,CHEMBL614757,Carnobacterium divergens,ORGANISM,,,False,,,,,,,,,,,,,,,
2751,species,Carnobacterium maltaromaticum,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium; Carnobacterium maltaromaticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,2,0,LOW,11.966952139692824,1,CHEMBL4296560,Carnobacterium maltaromaticum,ORGANISM,,,False,,,,,,,,,,,,,,,
155892,species,Caulobacter crescentus,2,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter; Caulobacter vibrioides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,13,0,MEDIUM,18.04731691199591,3,CHEMBL612285 | CHEMBL1287597 | CHEMBL4295627,Caulobacter vibrioides | Metallo-beta-lactamase | Cell cycle histidine kinase CckA,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
158484,species,Cedecea davisae,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cedecea; Cedecea davisae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,4,LOW,7.847762537473608,1,CHEMBL6066647,Cedecea davisae,ORGANISM,,,False,,,,,,,,,,,,,,,
158823,species,Cedecea lapagei,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cedecea; Cedecea lapagei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,4,LOW,11.512925464970229,0,,,,,,False,,,,,,,,,,,,,,,
158822,species,Cedecea neteri,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cedecea; Cedecea neteri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,3,1,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
1710,species,Cellulosimicrobium cellulans,2,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Promicromonosporaceae; Cellulosimicrobium; Cellulosimicrobium cellulans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,0.0,2,5,LOW,15.80201410398484,0,,,,,,False,,,,,,,,,,,,,,,
1293035,species,Chitinophaga polysaccharea,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga; Chitinophaga polysaccharea,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
2593957,species,Chitinophaga vietnamensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga; Chitinophaga vietnamensis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
83555,species,Chlamydia abortus,2,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia abortus,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,4,2,4.0,4,11,MEDIUM,23.48456055256744,0,,,,,,False,,,,,,,,,,,,,,,
83560,species,Chlamydia muridarum,1,12,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia muridarum,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,2,4,7.0,18,0,MEDIUM,28.10384087116661,1,CHEMBL6195178,Chlamydia muridarum,ORGANISM,,,False,,,,,,,,,,,,,,,
85991,species,Chlamydia pecorum,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia pecorum,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,3,1,19.0,1,2,MEDIUM,18.18043172473521,1,CHEMBL4523081,Chlamydia pecorum,ORGANISM,,,False,,,,,,,,,,,,,,,
83559,species,Chlamydia suis,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia suis,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,0,2,5.0,5,1,LOW,16.531300331160658,1,CHEMBL6195179,Chlamydia suis,ORGANISM,,,False,,,,,,,,,,,,,,,
813,species,Chlamydia trachomatis,1,118,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia trachomatis,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,37,54,37.0,195,143,HIGH,65.20790310978431,3,CHEMBL614606 | CHEMBL4888439 | CHEMBL6196189,Chlamydia trachomatis | Probable periplasmic serine endoprotease DegP-like | Deubiquitinase and deneddylase Dub2,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
83558,species,Chlamydophila pneumoniae,2,56,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia pneumoniae,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,3,7,3.0,18,8,MEDIUM,31.47551026492727,2,CHEMBL612694 | CHEMBL4105762,Chlamydia pneumoniae | Peptidyl-prolyl cis-trans isomerase Mip,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
83554,species,Chlamydophila psittaci,2,27,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia; Chlamydia psittaci,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; no rank; genus; species,Bacteria,3,3,3.0,4,5,LOW,22.315598281477573,1,CHEMBL6195182,Chlamydophila psittaci,ORGANISM,,,False,,,,,,,,,,,,,,,
270498,species,Christensenella hongkongensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Christensenellales; Christensenellaceae; Christensenella; Christensenella hongkongensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,3,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
394935,species,Chromobacterium haemolyticum,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium; Chromobacterium haemolyticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,0,3,LOW,7.824046010856292,0,,,,,,False,,,,,,,,,,,,,,,
536,species,Chromobacterium violaceum,1,46,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium; Chromobacterium violaceum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,33,5,2.0,29,47,MEDIUM,42.5551330027037,2,CHEMBL613862 | CHEMBL1795164,Chromobacterium violaceum | CviR transcriptional regulator,ORGANISM | SINGLE PROTEIN,,,False,rna_transcription,,,,,,,,,,,,,,
250,species,Chryseobacterium gleum,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; Chryseobacterium gleum,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; no rank; genus; species,Bacteria,0,0,0.0,3,7,LOW,9.010913347279288,0,,,,,,False,,,,,,,,,,,,,,,
253,species,Chryseobacterium indologenes,1,12,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; Chryseobacterium indologenes,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; no rank; genus; species,Bacteria,3,4,0.0,11,23,MEDIUM,25.97607826106981,4,CHEMBL613343 | CHEMBL1667689 | CHEMBL1667690 | CHEMBL1667691,Chryseobacterium indologenes | Metallo-beta-lactamase IND-6 | IND-like metallo-beta-lactamase | Metallo-beta-lactamase IND-2,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
35703,species,Citrobacter amalonaticus,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter amalonaticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,3,0,LOW,11.78350206951907,1,CHEMBL615077,Citrobacter amalonaticus,ORGANISM,,,False,,,,,,,,,,,,,,,
57706,species,Citrobacter braakii,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex; Citrobacter braakii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,2,0.0,2,4,LOW,13.17092494401876,1,CHEMBL6195183,Citrobacter braakii,ORGANISM,,,False,,,,,,,,,,,,,,,
546,species,Citrobacter freundii,1,27,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex; Citrobacter freundii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,11,2,11.0,18,35,MEDIUM,36.51099059902064,4,CHEMBL612615 | CHEMBL5303 | CHEMBL1255130 | CHEMBL2233619,Citrobacter freundii | PER-2 beta-lactamase | Beta-lactamase | Beta-lactamase SHV-95,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,PDG000000039.1326.metadata.tsv,5325.0,MTCC 1658 | GTC 09479 | GTC 09629 | UCI 31 | RLS1 | 5-172-05_S1_C1 | ATCC 8090 | NBRC 12681 | FDAARGOS_73 | MRSN 11938,"ANAV,""MTCC 1658"",""MTCC:1658"" | AOMS,""GTC 09479"" | AOUE,""GTC 09629"",""GTC:09629"" | Citrobacter freundii UCI 31,""SRS485421"",""UCI 31"" | JATT,""RLS1"" | 5-172-05_S1_C1,""PCOLI_5-172-05S1C1"",""SRS568263"" | ATCC 8090,""ATCC:8090"",""Cfr8090"" | NBRC 12681 | FDA:FDAARGOS_73,""FDAARGOS_73"",""SRS719066"" | MRSN 11938,""MRSN11938""",SAMN02469678 | SAMN02469850 | SAMN02469849 | SAMN02356611 | SAMN02951916 | SAMN02680232 | SAMN02742758 | SAMD00018684 | SAMN02934525 | SAMN03316839,PRJNA177199 | PRJNA187423 | PRJNA190645 | PRJNA219281 | PRJNA226604 | PRJNA233703 | PRJNA65519 | PRJDB10 | PRJNA231221 | PRJNA273931,GCA_000312465.1 | GCA_000342325.1 | GCA_000388155.1 | GCA_000521965.1 | GCA_000582615.1 | GCA_000714305.1 | GCA_000734905.1 | GCA_000759735.1 | GCA_000783755.2 | GCA_000937455.2,ANAV00000000.1 | AOMS00000000.1 | AOUE00000000.1 | JAPB00000000.1 | JATT00000000.1 | JOQX00000000.1 | JMTA00000000.1 | BBMV00000000.1 | JYFY00000000.2,1983-05 | 2009-01-22 | 2013-09-27 | 2012-09-28,"USA | Japan | USA: Irvine, CA | Tanzania | Netherlands",Homo sapiens,Respiratory distress,canal water | urine | stool | lung tissue grind | Surveillance Swab,
545,species,Citrobacter koseri,2,11,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter koseri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,6,35,MEDIUM,19.551394308772185,1,CHEMBL614438,Citrobacter koseri,ORGANISM,,,False,,,,,,,,,,,,,,,
1639133,species,Citrobacter portucalensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex; Citrobacter portucalensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,PDG000000147.14.metadata.tsv,585.0,4_7_47CFAA | 30_2 | UCI 32 | P10159 | CF1_ST89 | CF4_ST90 | NR-12 | A60 | MBTC-1222 | AM17-37,"46379,""4_7_47CFAA"",""SRS4768305"" | 30_2,""32453"",""SRS4768290"" | Citrobacter freundii UCI 32,""SRS485420"",""UCI 32"" | P10159 | CF1_ST89,""SRS2096758"" | CF4_ST90,""CF_4_ST_90"",""SRS2096759"" | NR-12,""NR-K-DR4"" | A60,""FFUPA60"",""SRS1948677"" | MBT C1222,""MBTC-1222"" | AM17-37",SAMN02463852 | SAMN02463699 | SAMN02356612 | SAMN03996567 | SAMN05440239 | SAMN05441395 | SAMN06603405 | SAMN06214708 | SAMN08148594 | SAMN09734850,PRJNA46379 | PRJNA32453 | PRJNA219282 | PRJNA293024 | PRJNA335317 | PRJNA335390 | PRJNA379205 | PRJNA369027 | PRJNA421649 | PRJNA482748,GCA_000238735.1 | GCA_000158355.2 | GCA_000521945.1 | GCA_001281005.1 | GCA_001867255.1 | GCA_001880775.1 | GCA_002051555.1 | GCA_002042885.1 | GCA_002843195.2 | GCA_003471655.1,ADLG00000000.1 | ACDJ00000000.2 | JAPA00000000.1 | MCJD00000000.1 | MCOM00000000.1 | MZZE00000000.1 | MVFY00000000.1 | PJEP00000000.1 | QRJT00000000.1,missing | 2013-08 | 2009-08-20 | 2010-09-09 | 2015-10-20 | 2008-02-24 | 2017-08-28 | 2013-09-01,"not provided | USA: Irvine, CA | China | Spain: Madrid | Bangladesh: Rupganj, Narayanganj | Portugal: Taboeira, Cadima, Cantanhede | Nigeria | China: Shenzhen",Homo sapiens | chicken,No disease,urine | Patient urine | clinical | Dropping | vegetable | feces,
67825,species,Citrobacter rodentium,1,46,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter rodentium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,18,12,3.0,38,0,MEDIUM,40.563000941938384,1,CHEMBL4513189,Citrobacter rodentium,ORGANISM,,,False,,,,,,,,,,,,,,,
67827,species,Citrobacter werkmanii,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex; Citrobacter werkmanii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,1,0.0,3,0,LOW,9.010913347279288,1,CHEMBL6195078,Citrobacter werkmanii,ORGANISM,,,False,,,,,,,,,,,,,,,
133448,species,Citrobacter youngae,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex; Citrobacter youngae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,1,CHEMBL6195185,Citrobacter youngae,ORGANISM,,,False,,,,,,,,,,,,,,,
1496,species,Clostridioides difficile,1,61,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,31,23,29.0,54,136,HIGH,55.15614671755754,5,CHEMBL614965 | CHEMBL2363852 | CHEMBL3580504 | CHEMBL3580505 | CHEMBL4804248,Clostridioides difficile | DNA-directed RNA polymerase | Toxin A | Toxin B | Elongation factor Tu,ORGANISM | PROTEIN COMPLEX | SINGLE PROTEIN,,,False,rna_transcription | virulence,PDG000000045.851.metadata.tsv,39574.0,CD196 | R20291 | ATCC 43255 | CIP 107932 | QCD-23m63 | NAP08 | NAP07 | CF5 | M120 | BI1,"CD196,""ERS610225"",""GCA_000085225"" | ERS610178,""GCA_000027105"",""R20291"" | ABKJ,""ATCC 43255"",""ATCC:43255"" | ABKK,""CIP 107932"" | ABKL,""QCD-23m63"" | BCM-HMP0035,""NAP08"",""SRS001931"" | BCM-HMP0034,""NAP07"",""SRS001930"" | CF5,""ERS610302"",""GCA_000210415"" | ERS610303,""GCA_000210435"",""M120"" | BI1,""ERS610330"",""GCA_000211235""",SAMEA3138290 | SAMEA3138243 | SAMN02470534 | SAMN02470535 | SAMN02470540 | SAMN00001466 | SAMN00001465 | SAMEA3138367 | SAMEA3138368 | SAMEA3138395,PRJNA38037 | PRJNA38039 | PRJNA28559 | PRJNA28561 | PRJNA28557 | PRJNA31441 | PRJNA31439 | PRJNA42465 | PRJNA42467 | PRJNA42469,GCA_000085225.1 | GCA_000027105.1 | GCA_000155025.1 | GCA_000155045.1 | GCA_000155065.1 | GCA_000164175.1 | GCA_000164655.1 | GCA_000210415.1 | GCA_000210435.1 | GCA_000211235.1,ABKJ00000000.2 | ABKK00000000.2 | ABKL00000000.2 | ADNX00000000.1 | ADVM00000000.1,missing | 1995 | 2007 | 1988,"United Kingdom | France: Marne, Reims | Canada: Quebec, Montreal | not provided | Belgium | USA",Homo sapiens,,28 year old female with pseudomembranous colitis | male patient with severe CDAD | Homo sapiens,
1491,species,Clostridium botulinum,1,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium botulinum group; Clostridium botulinum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,6,12,2.0,14,68,MEDIUM,35.450070756050394,5,CHEMBL614963 | CHEMBL5192 | CHEMBL1075064 | CHEMBL1697662 | CHEMBL2007627,Clostridium botulinum | Botulinum neurotoxin type A | Botulinum neurotoxin type B | Botulinum neurotoxin type E | Botulinum neurotoxin type F,ORGANISM | SINGLE PROTEIN,,,False,virulence,PDG000000059.234.metadata.tsv,1452.0,ATCC 19397 | Hall | Langeland | Okra | Loch Maree | Alaska E43 | 657 | Kyoto | NCTC 2916 | Bf,"ATCC 19397,""ATCC:19397"",""CP000726"" | CP000727,""Hall"" | CP000728,""Langeland"" | CP000939,""Okra"" | CP000962,""Loch Maree"" | Alaska E43,""CP001078"" | 657,""CP001083"" | CP001581,""Kyoto"" | ABDO,""NCTC 2916"" | ABDP,""Bf""",SAMN02603532 | SAMN02603534 | SAMN02603533 | SAMN02603535 | SAMN02603536 | SAMN02603537 | SAMN02603539 | SAMN02603540 | SAMN02436237 | SAMN02436292,PRJNA19517 | PRJNA19521 | PRJNA19519 | PRJNA28505 | PRJNA28507 | PRJNA28855 | PRJNA29077 | PRJNA29859 | PRJNA20013 | PRJNA20015,GCA_000017025.1 | GCA_000017045.1 | GCA_000017065.1 | GCA_000019305.1 | GCA_000019545.1 | GCA_000020285.1 | GCA_000020345.1 | GCA_000022765.1 | GCA_000171055.1 | GCA_000171075.1,ABDO00000000.2 | ABDP00000000.1,1978,Japan: Kyoto,Homo sapiens,,infant botulism case,
1492,species,Clostridium butyricum,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium butyricum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,8,0.0,1,6,LOW,12.0033197838637,1,CHEMBL614964,Clostridium butyricum,ORGANISM,,,False,,,,,,,,,,,,,,,
36834,species,Clostridium celatum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium celatum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
29354,species,Clostridium celerecrescens,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lacrimispora; Lacrimispora celerecrescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,1,CHEMBL6195193,Clostridium celerecrescens,ORGANISM,,,False,,,,,,,,,,,,,,,
46867,species,Clostridium chauvoei,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium chauvoei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,0,1,LOW,3.9889840465642745,0,,,,,,False,,,,,,,,,,,,,,,
33035,species,Clostridium coccoides,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia; Blautia producta,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,1,LOW,5.545177444479562,1,CHEMBL5465470,Blautia producta,ORGANISM,,,False,,,,,,,,,,,,,,,
84025,species,Clostridium haemolyticum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium haemolyticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,2,LOW,5.493061443340549,0,,,,,,False,,,,,,,,,,,,,,,
1498,species,Clostridium histolyticum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Hathewaya; Hathewaya histolytica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,16,MEDIUM,6.298949246855942,4,CHEMBL614966 | CHEMBL5572 | CHEMBL2268009 | CHEMBL4630869,Hathewaya histolytica | Clostripain | Collagenase ColG | Collagenase ColH,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1522,species,Clostridium innocuum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; [Clostridium] innocuum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,0.0,0,5,LOW,10.632773779711949,1,CHEMBL614761,[Clostridium] innocuum,ORGANISM,,,False,,,,,,,,,,,,,,,
36845,species,Clostridium intestinale,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium intestinale,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1502,species,Clostridium perfringens,1,66,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium perfringens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,21,30,24.0,47,167,MEDIUM,53.58385211056782,2,CHEMBL614967 | CHEMBL5189,Clostridium perfringens | Sialidase,ORGANISM | SINGLE PROTEIN,,,False,,PDG000000061.368.metadata.tsv,5422.0,13 | ATCC 13124 | SM101 | JGS1495 | ATCC 3626 | JGS1987 | F4969 | str. NCTC 8239 | JGS1721 | WAL-14572,"13,""BA000016.AP003515"" | ATCC 13124,""ATCC:13124"",""CP000246"" | CP000312,""SM101"" | ABDU,""JGS1495"" | ABDV,""ATCC 3626"" | ABDW,""JGS1987"" | ABDX,""F4969"" | ABDY,""str. NCTC 8239"" | ABOO,""JGS1721"" | 46397,""SRS4768302"",""WAL-14572""",SAMD00061119 | SAMN02604008 | SAMN02604026 | SAMN02436294 | SAMN02436295 | SAMN02436167 | SAMN02436168 | SAMN02436239 | SAMN02436277 | SAMN02463856,PRJNA79 | PRJNA304 | PRJNA12521 | PRJNA20025 | PRJNA20027 | PRJNA20029 | PRJNA20031 | PRJNA20033 | PRJNA28587 | PRJNA46397,GCA_000009685.1 | GCA_000013285.1 | GCA_000013845.2 | GCA_000171135.1 | GCA_000171155.1 | GCA_000171175.1 | GCA_000171195.1 | GCA_000171215.1 | GCA_000172455.1 | GCA_000243175.1,ABDU00000000.1 | ABDV00000000.1 | ABDW00000000.1 | ABDX00000000.1 | ABDY00000000.1 | ABOO00000000.1 | ADLP00000000.1,missing,not provided,Homo sapiens,,,
1504,species,Clostridium septicum,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium septicum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,2.0,2,97,MEDIUM,20.82858573737945,1,CHEMBL614968,Clostridium septicum,ORGANISM,,,False,,,,,,,,,,,,,,,
29370,species,Clostridium sphenoides,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lacrimispora; Lacrimispora sphenoides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL615028,Lacrimispora sphenoides,ORGANISM,,,False,,,,,,,,,,,,,,,
1509,species,Clostridium sporogenes,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium sporogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,2,4,LOW,13.17092494401876,1,CHEMBL614969,Clostridium sporogenes,ORGANISM,,,False,,,,,,,,,,,,,,,
1550,species,Clostridium subterminale,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium subterminale,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,2,LOW,5.493061443340549,1,CHEMBL6195080,Clostridium subterminale,ORGANISM,,,False,,,,,,,,,,,,,,,
1512,species,Clostridium symbiosum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Otoolea; [Clostridium] symbiosum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,3,LOW,7.6246189861593985,1,CHEMBL6195209,Clostridium symbiosum,ORGANISM,,,False,,,,,,,,,,,,,,,
1559,species,Clostridium tertium,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium tertium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,3,11,MEDIUM,12.188967177627234,1,CHEMBL613074,Clostridium tertium,ORGANISM,,,False,,,,,,,,,,,,,,,
1513,species,Clostridium tetani,1,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium tetani,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,6,59,MEDIUM,20.75536711309812,2,CHEMBL613073 | CHEMBL5500295,Clostridium tetani | Tetanus toxoid,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1515,species,Clostridium thermocellum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Acetivibrionales; Acetivibrionaceae; Acetivibrio; Acetivibrio thermocellus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
225992,species,Comamonas kerstersii,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas; Comamonas kerstersii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,1,2.0,2,5,LOW,19.345127627805912,0,,,,,,False,,,,,,,,,,,,,,,
32013,species,Comamonas terrigena,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas; Comamonas terrigena,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,1,CHEMBL6195212,Comamonas terrigena,ORGANISM,,,False,,,,,,,,,,,,,,,
285,species,Comamonas testosteroni,2,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas; Comamonas testosteroni,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,2,0.0,11,8,MEDIUM,25.701235288501803,0,,,,,,False,,,,,,,,,,,,,,,
38284,species,Corynebacterium accolens,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium accolens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,3,LOW,6.87935580446044,1,CHEMBL615029,Corynebacterium accolens,ORGANISM,,,False,,,,,,,,,,,,,,,
43765,species,Corynebacterium amycolatum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium amycolatum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,2.0,0,6,LOW,9.688312170871097,1,CHEMBL615030,Corynebacterium amycolatum,ORGANISM,,,False,,,,,,,,,,,,,,,
42817,species,Corynebacterium argentoratense,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium argentoratense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
169292,species,Corynebacterium aurimucosum,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium aurimucosum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,1,2,LOW,10.345091707260163,1,CHEMBL615031,Corynebacterium aurimucosum,ORGANISM,,,False,,,,,,,,,,,,,,,
99807,species,Corynebacterium auriscanis,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium auriscanis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
2014537,species,Corynebacterium belfantii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium belfantii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
36808,species,Corynebacterium bovis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium bovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,8.0,1,6,LOW,18.64710951701137,1,CHEMBL613953,Corynebacterium bovis,ORGANISM,,,False,,,,,,,,,,,,,,,
1717,species,Corynebacterium diphtheriae,1,31,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium diphtheriae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,10,6,2.0,44,53,MEDIUM,40.64883261111152,3,CHEMBL612638 | CHEMBL5340 | CHEMBL5500294,Corynebacterium diphtheriae | Diphtheria toxin | Diphtheria toxoid,ORGANISM | SINGLE PROTEIN,,,False,virulence,,,,,,,,,,,,,,
43767,species,Corynebacterium equi,2,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Prescottella; Prescottella equi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,0,1.0,1,3,LOW,15.027222934384389,1,CHEMBL612439,Prescottella equi,ORGANISM,,,False,,,,,,,,,,,,,,,
2913499,species,Corynebacterium evansiae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium evansiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
134034,species,Corynebacterium freneyi,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium freneyi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,0,,,,,,False,,,,,,,,,,,,,,,
39791,species,Corynebacterium glucuronolyticum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium glucuronolyticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,3,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
1718,species,Corynebacterium glutamicum,1,16,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium glutamicum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,25,0,MEDIUM,23.221954495706864,2,CHEMBL614979 | CHEMBL5169238,Corynebacterium glutamicum | Pup--protein ligase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
2041036,species,Corynebacterium gottingense,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium gottingense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
3139423,species,Corynebacterium hiratae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium hiratae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,0,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
38289,species,Corynebacterium jeikeium,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium jeikeium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,3.0,6,13,MEDIUM,17.913785519371388,1,CHEMBL613351,Corynebacterium jeikeium,ORGANISM,,,False,,,,,,,,,,,,,,,
161879,species,Corynebacterium kroppenstedtii,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium kroppenstedtii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,7,LOW,10.345091707260169,0,,,,,,False,,,,,,,,,,,,,,,
35755,species,Corynebacterium kutscheri,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium kutscheri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,0,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
2913501,species,Corynebacterium macclintockiae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium macclintockiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
38301,species,Corynebacterium minutissimum,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium minutissimum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,8,LOW,2.19722457733622,1,CHEMBL613954,Corynebacterium minutissimum,ORGANISM,,,False,,,,,,,,,,,,,,,
38302,species,Corynebacterium mycetoides,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium mycetoides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1032851,species,Corynebacterium nuruki,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium nuruki,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1544416,species,Corynebacterium oculi,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium oculi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,1,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
43769,species,Corynebacterium propinquum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium propinquum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,3.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
37637,species,Corynebacterium pseudodiphtheriticum,2,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium pseudodiphtheriticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,2,6,LOW,13.219715108188192,1,CHEMBL613352,Corynebacterium pseudodiphtheriticum,ORGANISM,,,False,,,,,,,,,,,,,,,
1719,species,Corynebacterium pseudotuberculosis,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium pseudotuberculosis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,0,4.0,4,13,MEDIUM,22.222888883373304,1,CHEMBL4513191,Corynebacterium pseudotuberculosis,ORGANISM,,,False,,,,,,,,,,,,,,,
258224,species,Corynebacterium resistens,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium resistens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,2,0,LOW,11.03823888782011,0,,,,,,False,,,,,,,,,,,,,,,
2719119,species,Corynebacterium rouxii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium rouxii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
2320431,species,Corynebacterium silvaticum,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium silvaticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,3,0,LOW,12.476649250079015,0,,,,,,False,,,,,,,,,,,,,,,
43770,species,Corynebacterium striatum,1,25,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium striatum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,2,7.0,7,43,MEDIUM,28.07386894141784,1,CHEMBL615033,Corynebacterium striatum,ORGANISM,,,False,,PDG000000064.113.metadata.tsv,794.0,ATCC 6940 | 1327_CAUR | 1329_CAUR | 587_CAUR | 797_CAUR | 962_CAUR | 963_CAUR | 542_CAUR | KC-Na-01 | 2230,"ATCC 6940,""ATCC:6940"",""BCM-HMP0071"",""SRS001988"" | 1327_CAUR,""SRS746514"" | 1329_CAUR,""SRS746518"" | 587_CAUR,""SRS746996"" | 797_CAUR,""SRS747217"" | 962_CAUR,""SRS747390"" | 963_CAUR,""SRS747389"" | 542_CAUR,""SRS746945"" | Corynebacterium striatum KC-Na-01,""KC-Na-01"" | 2230,""Cs2230""",SAMN00001507 | SAMN03197307 | SAMN03197309 | SAMN03197788 | SAMN03198009 | SAMN03198182 | SAMN03198183 | SAMN03197740 | SAMN07109493 | SAMN04517755,PRJNA31449 | PRJNA267549 | PRJNA386621 | PRJNA313269,GCA_000159135.1 | GCA_001053405.1 | GCA_001053435.1 | GCA_001055405.1 | GCA_001058455.1 | GCA_001059665.1 | GCA_001059955.1 | GCA_001076975.1 | GCA_002156805.1 | GCA_002775055.1,ACGE00000000.1 | JVTN00000000.1 | JVTL00000000.1 | JVBA00000000.1 | JUSN00000000.1 | JULW00000000.1 | JULV00000000.1 | JVCW00000000.1 | LTBF00000000.1,missing | 2017-01,not determined | USA: WA | South Korea: South sea | Brazil: Rio de Janeiro,Homo sapiens | Neophocaena asiaeorientalis,,Blowhole swab | blood,
65058,species,Corynebacterium ulcerans,1,15,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium ulcerans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,17,2,0.0,3,9,MEDIUM,24.091380796182488,1,CHEMBL4888469,Corynebacterium ulcerans,ORGANISM,,,False,,,,,,,,,,,,,,,
43771,species,Corynebacterium urealyticum,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium urealyticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,2,18,MEDIUM,14.218243938299318,1,CHEMBL613955,Corynebacterium urealyticum,ORGANISM,,,False,,,,,,,,,,,,,,,
1725,species,Corynebacterium xerosis,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium xerosis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,1.0,1,2,LOW,12.388394202324127,1,CHEMBL612288,Corynebacterium xerosis,ORGANISM,,,False,,,,,,,,,,,,,,,
777,species,Coxiella burnetii,1,98,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella; Coxiella burnetii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,126,54,15.0,47,187,HIGH,61.53637236338075,1,CHEMBL3301408,Coxiella burnetii,ORGANISM,,,False,,,,,,,,,,,,,,,
413497,species,Cronobacter dublinensis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter; Cronobacter dublinensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
413503,species,Cronobacter malonaticus,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter; Cronobacter malonaticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,0,0,LOW,2.19722457733622,0,,,,,,False,,,,,,,,,,,,,,,
28141,species,Cronobacter sakazakii,2,51,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter; Cronobacter sakazakii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,4.0,3,5,LOW,16.794137363615327,1,CHEMBL4523084,Cronobacter sakazakii,ORGANISM,,,False,,,,,,,,,,,,,,,
413502,species,Cronobacter turicensis,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter; Cronobacter turicensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
82541,species,Cupriavidus gilardii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus gilardii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,1.0,1,9,LOW,13.592367006650065,0,,,,,,False,,,,,,,,,,,,,,,
119219,species,Cupriavidus metallidurans,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus metallidurans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
82633,species,Cupriavidus pauculus,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus pauculus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,1.0,0,6,LOW,10.499242387087424,0,,,,,,False,,,,,,,,,,,,,,,
2559073,species,Cutibacterium modestum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Cutibacterium; Cutibacterium modestum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,5,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
2056700,species,Cysteiniphilum litorale,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Fastidiosibacteraceae; Cysteiniphilum; Cysteiniphilum litorale,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
55148,species,Deinococcus proteolyticus,1,1,True,False,False,root; cellular organisms; Bacteria; Thermotogati; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus proteolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
1299,species,Deinococcus radiodurans,1,3,True,False,False,root; cellular organisms; Bacteria; Thermotogati; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus radiodurans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,5,0,LOW,11.03823888782011,0,,,,,,False,,,,,,,,,,,,,,,
80866,species,Delftia acidovorans,2,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia; Delftia acidovorans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,0,9,LOW,8.740336742730447,1,CHEMBL615080,Delftia acidovorans,ORGANISM,,,False,,,,,,,,,,,,,,,
558537,species,Delftia lacustris,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia; Delftia lacustris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
180282,species,Delftia tsuruhatensis,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia; Delftia tsuruhatensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,1,1,LOW,9.704060527839234,0,,,,,,False,,,,,,,,,,,,,,,
36740,species,Dermabacter hominis,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Dermabacteraceae; Dermabacter; Dermabacter hominis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,3,1,LOW,7.6246189861593985,1,CHEMBL1169592,Dermabacter hominis,ORGANISM,,,False,,,,,,,,,,,,,,,
322601,species,Dermacoccus barathri,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Dermacoccaceae; Dermacoccus; Dermacoccus barathri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1863,species,Dermatophilus congolensis,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Dermatophilaceae; Dermatophilus; Dermatophilus congolensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,0,2.0,0,3,LOW,11.367159534677365,0,,,,,,False,,,,,,,,,,,,,,,
44742,species,Desulfovibrio fairfieldensis,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio fairfieldensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,3,LOW,3.465735902799726,1,CHEMBL6195083,Desulfovibrio fairfieldensis,ORGANISM,,,False,,,,,,,,,,,,,,,
472569,species,Devriesea agamarum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Dermabacteraceae; Devriesea; Devriesea agamarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,1,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
870,species,Dichelobacter nodosus,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Dichelobacter; Dichelobacter nodosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,6.0,4,2,LOW,13.037622148949238,0,,,,,,False,,,,,,,,,,,,,,,
37915,species,Dietzia maris,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Dietziaceae; Dietzia; Dietzia maris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,1,LOW,6.761572768804056,0,,,,,,False,,,,,,,,,,,,,,,
29394,species,Dolosigranulum pigrum,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Dolosigranulum; Dolosigranulum pigrum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
1821960,species,Edwardsiella anguillarum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella; Edwardsiella anguillarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,0.0,0,0,LOW,3.295836866004329,0,,,,,,False,,,,,,,,,,,,,,,
67780,species,Edwardsiella ictaluri,1,9,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella; Edwardsiella ictaluri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,1,CHEMBL4296570,Edwardsiella ictaluri,ORGANISM,,,False,,PDG000000079.58.metadata.tsv,147.0,93-146 | ATCC 33202 | RUSVM-1 | MS-17-156 | S97-773 | S07-698 | NCTC12122 | 2234 | T1-1 | AQ-19-VL-NY-MS-0038,"93-146,""CP001600"" | AFJI,""ATCC 33202"",""ATCC:33202"" | RUSVM-1 | Edwardsiella-ictaluri-MS-17-156,""MS-17-156"" | S97-773 | Edwardsiella ictaluri S07-698,""S07-698"" | ERS1403241,""NCTC12122"",""NCTC:12122"",""a1717c80-8c8f-11e6-95da-3c4a9275d6c8"" | 2234,""EIC2234"",""SRS6678052"" | EIC2083,""SRS6678053"",""T1-1"" | AQ-19-VL-NY-MS-0038,""OTH-19-VL-NY-MS-0038"",""SRS7904839""",SAMN02603942 | SAMN02469763 | SAMN06637964 | SAMN08906337 | SAMN08930763 | SAMN08930813 | SAMEA4504062 | SAMN12905447 | SAMN12905448 | SAMN17106052,PRJNA34853 | PRJNA66365 | PRJNA380243 | PRJNA449538 | PRJNA450130 | PRJNA450136 | PRJEB6403 | PRJNA575615 | PRJNA481355,GCA_000022885.2 | GCA_000264785.1 | GCA_002076875.1 | GCA_003054425.1 | GCA_003058405.2 | GCA_003074995.2 | GCA_900447225.1 | GCA_016070795.1 | GCA_016070975.1 | GCA_029691365.1,AFJI00000000.1 | UFXT00000000.1 | ABLMFC000000000.1,1976 | 2012 | 2017-04-26 | 1997 | 2007 | 1900/1987 | 2016-06 | 2014-06 | 2019-10-07,USA: Georgia | USA:Mississippi | USA | Viet Nam: Thaibinh | Thailand: Ratchaburi | USA:MS,Ictalurus punctatus | Oreochromis niloticus | catfish | Channel Catfish,,not available: to be reported later | cell culture | brain and kidney,not available: to be reported later
636,species,Edwardsiella tarda,1,33,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella; Edwardsiella tarda,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,18,5,1.0,13,46,MEDIUM,35.584762935256165,1,CHEMBL614598,Edwardsiella tarda,ORGANISM,,,False,,PDG000000081.54.metadata.tsv,124.0,ATCC 23685 | NBRC 105688 | ATCC 15947 | DT | FL95-01 | ASE201307 | NCIMB2034 | KC-Pc-HB1 | FDAARGOS_370 | LADL88-209,"ATCC 23685,""ATCC:23685"",""Edwardsiella tarda ATCC 23685"",""SRS001150"" | NBRC 105688 | AFJG,""ATCC 15947"",""ATCC:15947"" | AFJJ,""DT"" | FL95-01 | ASE201307,""Edwardsiella tarda ASE201307"" | NCIMB2034 | Edwardsiella hoshinae KC-Pc-HB1,""KC-Pc-HB1"" | FDA:FDAARGOS_370,""FDAARGOS_370"",""SRS2383047"" | LADL88-209",SAMN00000732 | SAMD00041800 | SAMN02469762 | SAMN02469760 | SAMN03579666 | SAMN05415001 | SAMN06131423 | SAMN07695532 | SAMN07312414 | SAMN08939836,PRJNA28661 | PRJDB227 | PRJNA39897 | PRJNA66369 | PRJNA282821 | PRJNA329181 | PRJNA357015 | PRJNA412107 | PRJNA231221 | PRJNA450490,GCA_000163955.1 | GCA_000341505.1 | GCA_000264805.1 | GCA_000264825.1 | GCA_001011055.2 | GCA_001700615.1 | GCA_002006945.1 | GCA_002504285.1 | GCA_002554415.1 | GCA_003113435.3,ADGK00000000.1 | BANW00000000.1 | AFJG00000000.1 | AFJJ00000000.1 | MBLV00000000.1 | MSSL00000000.1 | PDDV00000000.1,missing | 1959 | 2007 | 1995 | 2013-07-15 | 1977 | 2017-03 | 2014-06-24 | 1988,"not determined | USA: Kentucky | China: Guangzhou | USA | China: Lichuan City, Hubei Province | South Korea: South sea | USA:DC",Homo sapiens | Astronotus ocellatus | Ictalurus punctatus | swamp eel | unknown fish | Pseudorca crassidens | Morone chrysops x Morone saxatilis,edwardsiellosis,Asian swamp eel | blood,
84112,species,Eggerthella lenta,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; Eggerthella lenta,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,1.0,2,18,MEDIUM,13.11963164963121,1,CHEMBL612337,Eggerthella lenta,ORGANISM,,,False,,,,,,,,,,,,,,,
31973,species,Eggerthia catenaformis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Eggerthia; Eggerthia catenaformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,3,3,LOW,14.386191754963454,1,CHEMBL6195279,Lactobacillus catenaformis,ORGANISM,,,False,,,,,,,,,,,,,,,
944,species,Ehrlichia canis,1,25,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,24,7,14.0,15,9,MEDIUM,40.69545703090968,1,CHEMBL612729,Ehrlichia canis,ORGANISM,,,False,,,,,,,,,,,,,,,
945,species,Ehrlichia chaffeensis,1,25,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia chaffeensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,25,22,6.0,15,17,MEDIUM,43.08400446707907,1,CHEMBL6195221,Ehrlichia chaffeensis,ORGANISM,,,False,,,,,,,,,,,,,,,
947,species,Ehrlichia ewingii,1,10,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia ewingii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,6,6,3.0,11,2,MEDIUM,29.91710530323509,0,,,,,,False,,,,,,,,,,,,,,,
1242993,species,Ehrlichia minasensis,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia minasensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
35795,species,Ehrlichia muris,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia muris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,4,7,0.0,16,0,MEDIUM,26.84214299505699,0,,,,,,False,,,,,,,,,,,,,,,
779,species,Ehrlichia ruminantium,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia ruminantium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,3,2.0,5,0,LOW,18.087493729075945,0,,,,,,False,,,,,,,,,,,,,,,
951,species,Ehrlichia sennetsu,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia sennetsu,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,1,0.0,3,0,LOW,11.78350206951907,0,,,,,,False,,,,,,,,,,,,,,,
539,species,Eikenella corrodens,1,15,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Eikenella; Eikenella corrodens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,1,3.0,15,86,MEDIUM,31.49864816049245,1,CHEMBL612614,Eikenella corrodens,ORGANISM,,,False,,,,,,,,,,,,,,,
1117645,species,Elizabethkingia anophelis,1,18,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Elizabethkingia; Elizabethkingia anophelis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,10,2,0.0,16,15,MEDIUM,29.82607339971868,0,,,,,,False,,,,,,,,,,,,,,,
172045,species,Elizabethkingia miricola,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Elizabethkingia; Elizabethkingia miricola,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,2,8,LOW,13.75871160892088,0,,,,,,False,,,,,,,,,,,,,,,
343874,species,Empedobacter falsenii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Empedobacter; Empedobacter falsenii,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,0,,,,,,False,,,,,,,,,,,,,,,
61645,species,Enterobacter asburiae,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter asburiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,1,1.0,4,2,LOW,15.38412647587812,1,CHEMBL2366991,Enterobacter asburiae,ORGANISM,,,False,,PDG000000106.322.metadata.tsv,1285.0,BWH 31 | L1 | UCI 49 | PDN3 | CIDEIMsCOL5 | CIDEIMsCOL4 | MNCRE20 | MNCRE14 | 33838 | 35642,"BWH 31,""Enterobacter cloacae BWH 31"",""SRS420703"" | AWXI,""L1"" | Enterobacter cloacae UCI 49,""SRS485438"",""UCI 49"" | 1035789,""PDN3"",""SRS1652524"" | CIDEIMsCOL5,""Enterobacter cloacae CIDEIMsCOL5"",""SRS849782"" | CIDEIMsCOL4,""Enterobacter cloacae CIDEIMsCOL4"",""SRS849197"" | MNCRE20 | MNCRE14 | 33838,""GCID_ENTE_00046"",""SRS858151"" | 35642,""GCID_ENTE_00082"",""SRS856590""",SAMN02138596 | SAMN02471838 | SAMN02356629 | SAMN02787124 | SAMN03277192 | SAMN03277191 | SAMN03333163 | SAMN03333156 | SAMN03283315 | SAMN03283672,PRJNA201971 | PRJNA218844 | PRJNA219301 | PRJNA247592 | PRJNA271006 | PRJNA272863 | PRJNA259658,GCA_000492675.1 | GCA_000498635.1 | GCA_000534055.1 | GCA_000799205.1 | GCA_000965825.1 | GCA_000966005.1 | GCA_000952575.1 | GCA_000952605.1 | GCA_000956765.1 | GCA_000957005.1,AYIP00000000.1 | AWXI00000000.1 | JCKL00000000.1 | JUGH00000000.1 | JZKP00000000.1 | JZKO00000000.1 | JYMM00000000.1 | JYMF00000000.1 | LAAP00000000.1 | JZZG00000000.1,missing | 2009 | 2011 | 2010 | 2012,"Malaysia | USA: Irvine, CA | Colombia | USA: Minnesota | USA: FL",Homo sapiens,,bile | lettuce leaf | urine | excreted bodily substance | bodily fluid | sputum,
550,species,Enterobacter cloacae,1,58,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,20,4,31.0,56,120,HIGH,48.94892217856494,8,CHEMBL2725 | CHEMBL3499 | CHEMBL3652 | CHEMBL349 | CHEMBL4314 | CHEMBL5219 | CHEMBL3562179 | CHEMBL3562181,Beta-lactamase | Beta-lactamase class C | Beta-lactamase TEM | Enterobacter cloacae | Imipenem-hydrolyzing beta-lactamase | IMI-1 | Class A carbapenemase,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,PDG000000028.1439.metadata.tsv,6711.0,ATCC 13047 | SDM | JD8715 | JD6301 | GGT036 | GN6 | 6kgm | CIDEIMsCOL10 | 42324 | B2,"ATCC 13047,""ATCC:13047"",""CP001918"" | CGMCC:4230,""CP003678"",""SDM"" | JD8715,""SRS1543947"",""gb|JDWG00000000.1"" | JD6301,""SRS1562599"",""gb|JDWH00000000.1"" | GGT-Soil,""GGT036"" | GN6 | 6kgm,""Enterobacter cloacae strain 6kgm"" | CIDEIMsCOL10,""Enterobacter cloacae CIDEIMsCOL10"",""SRS846933"" | 42324,""GCID_ENTE_00110"",""SRS856873"" | B2,""Enterobacter cloacae B2""",SAMN02603901 | SAMN02603521 | SAMN02952977 | SAMN02952978 | SAMN03005138 | SAMN03261528 | SAMN03274147 | SAMN03277197 | SAMN03283673 | SAMN03145044,PRJNA45793 | PRJNA74737 | PRJNA218810 | PRJNA218809 | PRJNA259401 | PRJNA270000 | PRJNA271365 | PRJNA271006 | PRJNA259658 | PRJNA265013,GCA_000025565.1 | GCA_000235765.3 | GCA_000686165.1 | GCA_000686185.1 | GCA_000770155.1 | GCA_000812505.1 | GCA_000818625.1 | GCA_000966095.1 | GCA_000958205.1 | GCA_001006645.1,JDWG00000000.1 | JDWH00000000.1 | JWPX00000000.1 | JXAE00000000.1 | JZKU00000000.1 | JZYG00000000.1 | JSWY00000000.1,2011-09-28 | 2014-09-15 | 2012-10 | 2011 | 2013,South Korea: Mt. Kwanak | Malaysia: Selangor | Malaysia | Colombia | USA: MI,Homo sapiens,,Water from farm | soil | bodily fluid | Bitter gout,
158836,species,Enterobacter hormaechei,1,14,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter hormaechei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,1,5.0,8,7,LOW,24.27370235297644,1,CHEMBL615043,Enterobacter hormaechei,ORGANISM,,,False,,PDG000000105.862.metadata.tsv,14048.0,ATCC 49162 | 08XA1 | YT2 | YT3 | UCICRE 11 | UCICRE 9 | UCICRE 5 | UCICRE 3 | BWH 29 | UCI 50,"ATCC 49162,""SRS188776"" | 08XA1,""AMGJ"" | ANIA,""YT2"" | ANID,""YT3"" | Entero Cloacae UCICRE 11,""SRS429516"",""UCICRE 11"" | Entero Cloacae UCICRE 9,""SRS429520"",""UCICRE 9"" | Entero Cloacae UCICRE 5,""SRS429519"",""UCICRE 5"" | Entero Cloacae UCICRE 3,""SRS429518"",""UCICRE 3"" | BWH 29,""Enterobacter cloacae BWH 29"",""SRS420709"" | Enterobacter cloacae UCI 50,""SRS485439"",""UCI 50""",SAMN00259689 | SAMN02470984 | SAMN02469368 | SAMN02469366 | SAMN02138616 | SAMN02138614 | SAMN02138610 | SAMN02138608 | SAMN02138594 | SAMN02356630,PRJNA53031 | PRJNA169339 | PRJNA179500 | PRJNA180991 | PRJNA201996 | PRJNA201992 | PRJNA201988 | PRJNA201986 | PRJNA201969 | PRJNA219302,GCA_000213995.1 | GCA_000315775.1 | GCA_000328905.1 | GCA_000328885.1 | GCA_000492455.1 | GCA_000492495.1 | GCA_000492575.1 | GCA_000492615.1 | GCA_000492715.1 | GCA_000534035.1,AFHR00000000.1 | AMGJ00000000.1 | ANIA00000000.1 | ANID00000000.1 | AYIE00000000.1 | AYIG00000000.1 | AYIK00000000.1 | AYIM00000000.1 | AYIR00000000.1 | JCKK00000000.1,missing | 2008-12 | 2012-02 | 2012-03,"not determined | China: Shaanxi | China | USA: Irvine, CA",Homo sapiens | Ailuropoda melanoleuca | Tenebrio molitor | Zophobas atratus,,"feces from giant panda at Shaanxi Rare Wildlife Rescuing and Breeding Center | feces | wound | aspirate, JP drain",
2494702,species,Enterobacter huaxiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter huaxiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
208224,species,Enterobacter kobei,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter kobei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,2.0,3,0,LOW,11.901285105175454,0,,,,,,False,,PDG000000108.325.metadata.tsv,1143.0,ENHKU01 | UCI 24 | BIDMC 67 | UCI 29 | MNCRE12 | 35730 | 44593 | 42202 | GN02186 | GN02225,"CP003737,""ENHKU01"" | Enterobacter cloacae UCI 24,""SRS485431"",""UCI 24"" | BIDMC 67,""Enterobacter cloacae BIDMC 67"",""SRS565189"" | Enterobacter cloacae UCI 29,""SRS485432"",""UCI 29"" | MNCRE12 | 35730,""GCID_ENTE_00096"",""SRS856627"" | 44593,""GCID_ENTE_00125"",""SRS856868"" | 42202,""GCID_ENTE_00109"",""SRS856667"" | Enterobacter sp. GN02186,""GN02186"",""SRS940725"" | Enterobacter sp. GN02225,""GN02225"",""SRS940718""",SAMN02603959 | SAMN02356604 | SAMN02581288 | SAMN02356609 | SAMN03333155 | SAMN03283662 | SAMN03283676 | SAMN03283656 | SAMN03495973 | SAMN03495976,PRJNA170442 | PRJNA219274 | PRJNA234155 | PRJNA219279 | PRJNA272863 | PRJNA259658,GCA_000286275.1 | GCA_000534275.1 | GCA_000692255.1 | GCA_000692355.1 | GCA_000952375.1 | GCA_000957175.1 | GCA_000957385.1 | GCA_000958445.1 | GCA_001011785.1 | GCA_001011975.1,JCKW00000000.1 | JMUQ00000000.1 | JMUV00000000.1 | JYME00000000.1 | JZYS00000000.1 | JZXR00000000.1 | JZYH00000000.1 | LDCJ00000000.1 | LDCL00000000.1,2013 | 2010 | 2012 | 2014 | 2003-06-01 | 2003-09-01,"USA: Irvine, CA | USA: Boston | USA: Minnesota | USA: FL | Colombia | USA: NYC | USA",Homo sapiens,,"urine | ABSCESS, PELVIC DRAIN | blood",
299767,species,Enterobacter ludwigii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter ludwigii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,3,0,LOW,9.704060527839234,0,,,,,,False,,PDG000000109.230.metadata.tsv,664.0,EcWSU1 | Hanford | P101 | EN-119 | OLC-1683 | OLC-1682 | GN02454 | GN02730 | GN02226 | UW5,"CP002886,""EcWSU1"" | Enterobacter cloacae strain Hanford,""Hanford"",""SRS452216"" | CP006580,""P101"" | DSM:16688,""EN-119"",""Enterobacter ludwigii EN-119"" | OLC-1683,""P1-4"",""SRS833790"" | OLC-1682,""P1-3"",""SRS833789"" | Enterobacter sp Enterobacter sp. GN02454,""GN02454"",""SRS953277"" | Enterobacter sp Enterobacter sp. GN02730,""GN02730"",""SRS953301"" | Enterobacter sp Enterobacter sp. GN02226,""GN02226"",""SRS953275"" | EclUW5,""SRS950384"",""UW5""",SAMN02604307 | SAMN02212350 | SAMN02641647 | SAMN03246119 | SAMN03292330 | SAMN03292329 | SAMN03732707 | SAMN03732724 | SAMN03732688 | SAMN03743787,PRJNA67983 | PRJNA206261 | PRJNA210654 | PRJNA268890 | PRJNA273275 | PRJNA259658 | PRJNA285312,GCA_000239975.1 | GCA_000422225.1 | GCA_000512375.1 | GCA_000818595.1 | GCA_000948705.1 | GCA_000948685.1 | GCA_001022445.2 | GCA_001022805.1 | GCA_001023245.1 | GCA_001029645.1,ATCK00000000.1 | JTLO00000000.1 | JXWL00000000.1 | JXWK00000000.1 | LEDW00000000.2 | LEER00000000.1 | LEEO00000000.1,2008-11 | 2005 | 2005-07-01 | 2008-10-01 | 2003-09-01 | 1994-09-29,USA: Washington | Germany:Munich | USA | Canada:Waterloo,Homo sapiens,,Water Sample | urine | not collected | bodily fluid,
1812935,species,Enterobacter roggenkampii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter roggenkampii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,1.0,1,2,LOW,5.950642552587727,0,,,,,,False,,PDG000000116.306.metadata.tsv,1203.0,EC_38VIM1 | UCICRE 12 | MGH 34 | UCI 39 | MGH 54 | CHS 79 | 35734 | GN1 | MNCRE16 | 35618,"EC_38VIM1,""SRS449869"" | Entero Cloacae UCICRE 12,""SRS429517"",""UCICRE 12"" | Enterobacter cloacae complex MGH 34,""MGH 34"",""SRS420743"" | Enterobacter cloacae UCI 39,""SRS485436"",""UCI 39"" | Enterobacter cloacae complex MGH 54,""MGH 54"",""SRS576244"" | CHS 79,""Enterobacter cloacae CHS 79"",""SRS576225"" | 35734,""GCID_ENTE_00006"",""SRS734216"" | GN1 | MNCRE16 | 35618,""GCID_ENTE_00080"",""SRS856580""",SAMN02194084 | SAMN02138617 | SAMN02138574 | SAMN02356619 | SAMN02581386 | SAMN02581381 | SAMN03067419 | SAMN03261526 | SAMN03333158 | SAMN03283661,PRJNA203245 | PRJNA201997 | PRJNA201949 | PRJNA219291 | PRJNA234253 | PRJNA234248 | PRJNA259658 | PRJNA269998 | PRJNA272863,GCA_000467655.2 | GCA_000492435.1 | GCA_000492895.1 | GCA_000534155.1 | GCA_000692335.1 | GCA_000692295.1 | GCA_000807415.4 | GCA_000812425.1 | GCA_000968725.1 | GCA_000956965.1,ATHX00000000.1 | AYID00000000.1 | AYJA00000000.1 | JCKQ00000000.1 | JMUU00000000.1 | JMUS00000000.1 | JWPV00000000.1 | JYMH00000000.1 | JZZI00000000.1,2009-05-25 | 2013 | 2010 | 2014-09-15 | 2012,"Spain | USA: Irvine, CA | USA: Boston | USA: North Carolina | USA | Malaysia: Perak | USA: Minnesota | USA: FL",Homo sapiens,,blood | urine | excreted bodily substance | water supply from a pigs farm,
69218,species,Enterobacter taylorae,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cancerogenus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,0,0.0,0,0,LOW,4.394449154672439,1,CHEMBL6195225,Enterobacter cancerogenus,ORGANISM,,,False,,,,,,,,,,,,,,,
33945,species,Enterococcus avium,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus avium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,1,0.0,3,11,MEDIUM,20.284718306412167,1,CHEMBL612354,Enterococcus avium,ORGANISM,,,False,,,,,,,,,,,,,,,
37734,species,Enterococcus casseliflavus,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus casseliflavus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,3.0,0,8,LOW,11.407564949312402,1,CHEMBL4523080,Enterococcus casseliflavus,ORGANISM,,,False,,,,,,,,,,,,,,,
44008,species,Enterococcus cecorum,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus cecorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,7.0,2,3,LOW,19.555432079236347,0,,,,,,False,,,,,,,,,,,,,,,
53345,species,Enterococcus durans,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus durans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,3.0,2,3,LOW,18.492958837184112,2,CHEMBL612292 | CHEMBL4313,Enterococcus durans | Aminoglycoside acetyltransferase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1351,species,Enterococcus faecalis,2,215,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,56,25,53.0,145,218,HIGH,64.2315676168894,4,CHEMBL362 | CHEMBL1293315 | CHEMBL3271927 | CHEMBL6066151,Enterococcus faecalis | Acetyl-CoA acetyltransferase/HMG-CoA reductase | Decarboxylase | Methionine--tRNA ligase,ORGANISM | SINGLE PROTEIN,,,False,protein_synthesis,PDG000000072.858.metadata.tsv,15062.0,V583 | T1 | T2 | T3 | ATCC 4200 | DS5 | AR01/DG | Merz96 | HIP11704 | JH1,"AE016830,""V583"" | ACAD,""T1"" | ACAE,""T2"" | ACAF,""T3"" | ACAG,""ATCC 4200"",""ATCC:4200"" | ACAI,""ATCC:14508"",""DS5"" | ACAK,""AR01/DG"" | ACAM,""Merz96"" | ACAN,""HIP11704"" | ACAP,""JH1""",SAMN02603978 | SAMN02595249 | SAMN02595250 | SAMN02595251 | SAMN02595252 | SAMN02595254 | SAMN02595256 | SAMN02595258 | SAMN02595259 | SAMN02595260,PRJNA70 | PRJNA32915 | PRJNA32917 | PRJNA32919 | PRJNA32923 | PRJNA32925 | PRJNA32929 | PRJNA32933 | PRJNA32937 | PRJNA32939,GCA_000007785.1 | GCA_000157135.1 | GCA_000157155.1 | GCA_000157175.1 | GCA_000157195.1 | GCA_000157235.1 | GCA_000157275.1 | GCA_000157315.1 | GCA_000157335.1 | GCA_000157375.1,ACAD00000000.1 | ACAE00000000.1 | ACAF00000000.1 | ACAG00000000.1 | ACAI00000000.1 | ACAK00000000.1 | ACAM00000000.1 | ACAN00000000.1 | ACAP00000000.1,,,,,,
1352,species,Enterococcus faecium,2,114,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,59,18,69.0,90,137,HIGH,61.18923688822789,7,CHEMBL357 | CHEMBL6037 | CHEMBL1667671 | CHEMBL1667672 | CHEMBL1681622 | CHEMBL3217389 | CHEMBL3243913,"Enterococcus faecium | Vancomycin/teicoplanin A-type resistance protein VanA | D,D-dipeptidase | D,D-carboxypeptidase | D-alanyl-D-alanine dipeptidase | Aac(6')-Ii protein | Dihydrofolate reductase",ORGANISM | SINGLE PROTEIN,,,False,cell_wall_biosynthesis | folate_metabolism,PDG000000071.960.metadata.tsv,51077.0,"1,230,933 | 1,231,502 | 1,231,501 | 1,141,733 | 1,231,410 | Com12 | Com15 | TX1330 | E980 | E1071","1,230,933,""ACAS"" | 1,231,502,""ACAX"" | 1,231,501,""ACAY"" | 1,141,733,""ACAZ"" | 1,231,410,""ACBA"" | ACBC,""Com12"" | ACBD,""Com15"" | BCM-HMP0078,""SRS002521"",""TX1330"" | ABQA,""E980"" | ABQI,""E1071""",SAMN02595263 | SAMN02595268 | SAMN02595269 | SAMN02595270 | SAMN02595271 | SAMN02595273 | SAMN02595274 | SAMN00002238 | SAMN02471501 | SAMN02471502,PRJNA32943 | PRJNA32955 | PRJNA32957 | PRJNA32959 | PRJNA32961 | PRJNA32965 | PRJNA32967 | PRJNA31463 | PRJNA29607 | PRJNA29887,GCA_000157435.1 | GCA_000157535.1 | GCA_000157555.1 | GCA_000157575.1 | GCA_000157595.1 | GCA_000157635.1 | GCA_000157655.1 | GCA_000159675.1 | GCA_000172615.1 | GCA_000172655.1,ACAS00000000.1 | ACAX00000000.1 | ACAY00000000.1 | ACAZ00000000.1 | ACBA00000000.1 | ACBC00000000.1 | ACBD00000000.1 | ACHL00000000.1 | ABQA00000000.1 | ABQI00000000.1,missing | 1998 | 2000,not provided | Netherlands,Homo sapiens,,healthy human volunteer | feces of a hospitalized patient,
1353,species,Enterococcus gallinarum,1,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus gallinarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,5.0,1,17,MEDIUM,15.484804043631565,1,CHEMBL613817,Enterococcus gallinarum,ORGANISM,,,False,,,,,,,,,,,,,,,
1354,species,Enterococcus hirae,1,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus hirae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,4,2.0,7,11,MEDIUM,28.225418839545046,1,CHEMBL614623,Enterococcus hirae,ORGANISM,,,False,,PDG000000122.132.metadata.tsv,1332.0,ATCC 9790 | EnGen0127 | INF E1 | 70-61-3 | 19m | 2011-70-61-3 | R17 | DSM 20160 | FSIS1608819 | FSIS1608714,"ATCC 9790,""ATCC:9790"",""CP003504"" | 2006-70-121,""EnGen0127"",""SRS416754"" | Enterococcus hirae INF E1,""INF E1"",""SRS601374"" | 70-61-3 | 19m | 2011-70-61-3,""DTU2011_115"",""ERS664800"",""sam_084900_20150225_DTU2011_115"" | R17,""raw meat 17"" | DSM 20160,""DSM:20160"",""DSM_20160"" | FSIS1608819,""SRS1870924"" | FSIS1608714,""SRS1870940""",SAMN02604142 | SAMN00808944 | SAMN02738239 | SAMN03069317 | SAMN03840868 | SAMEA3268868 | SAMN04892752 | SAMN03267174 | SAMN06163784 | SAMN06163804,PRJNA49385 | PRJNA88261 | PRJNA245485 | PRJNA261131 | PRJNA289061 | PRJEB8647 | PRJNA319460 | PRJNA270385 | PRJNA292669,GCA_000271405.2 | GCA_000391765.1 | GCA_000699565.1 | GCA_000767355.1 | GCA_001280825.1 | GCA_015517905.2 | GCA_001641305.1 | GCA_001885955.1 | GCA_015510665.2 | GCA_015511065.2,AISM00000000.1 | JMIG00000000.1 | JRUH00000000.1 | LGAO00000000.1 | DACKKH000000000.2 | JXKR00000000.1 | AAXHHC000000000.2 | AAXHHB000000000.2,2006 | 2009 | 2011 | 2014-05-05 | 2011-01-01 | 2015-05-15 | 2016,Denmark | Norway | Russia:Yakutsk | China: Beijing | USA:NH | USA:PA,Pig | pig | Sus scrofa domesticus | Sus scrofa,,cultured milk | malolyakovskiy mammoth's intestinal content | retail raw meat | animal-swine-market swine,
357441,species,Enterococcus lactis,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus lactis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,1,0,LOW,7.6246189861593985,1,CHEMBL5465472,Enterococcus lactis,ORGANISM,,,False,,,,,,,,,,,,,,,
53346,species,Enterococcus mundtii,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus mundtii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,2,0,LOW,9.887510598012987,1,CHEMBL5465474,Enterococcus mundtii,ORGANISM,,,False,,,,,,,,,,,,,,,
71452,species,Enterococcus raffinosus,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus raffinosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,2,9,LOW,15.420265522493992,1,CHEMBL5291653,Enterococcus raffinosus,ORGANISM,,,False,,,,,,,,,,,,,,,
554,species,Erwinia carotovora,2,13,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium; Pectobacterium carotovorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,17,0,MEDIUM,16.531300331160658,1,CHEMBL612990,Pectobacterium carotovorum,ORGANISM,,,False,,,,,,,,,,,,,,,
556,species,Erwinia chrysanthemi,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya; Dickeya chrysanthemi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,3,LOW,6.87935580446044,3,CHEMBL614440 | CHEMBL1075190 | CHEMBL4105825,Dickeya chrysanthemi | L-asparaginase | Cys-loop ligand-gated ion channel,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1619313,species,Erwinia gerundensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Duffyella; Duffyella gerundensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
55211,species,Erwinia persicinus,2,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia; Erwinia persicina,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL5465475,Erwinia persicina,ORGANISM,,,False,,,,,,,,,,,,,,,
2681984,species,Erwinia sorbitola,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia; Erwinia sorbitola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1547,species,Erysipelatoclostridium ramosum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia; Thomasclavelia ramosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,1,LOW,2.079441541679836,1,CHEMBL614971,Thomasclavelia ramosa,ORGANISM,,,False,,,,,,,,,,,,,,,
2485784,species,Erysipelothrix piscisicarius,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix; Erysipelothrix piscisicarius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1648,species,Erysipelothrix rhusiopathiae,1,11,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix; Erysipelothrix rhusiopathiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,23,5,5.0,3,37,MEDIUM,32.24007063285789,1,CHEMBL613077,Erysipelothrix rhusiopathiae,ORGANISM,,,False,,,,,,,,,,,,,,,
208962,species,Escherichia albertii,1,11,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia albertii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,3,1.0,1,1,LOW,17.487701124060486,0,,,,,,False,,,,,,,,,,,,,,,
562,species,Escherichia coli,2,1609,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,894,924,370.0,1839,1143,HIGH,104.13897063580646,69,CHEMBL1809 | CHEMBL2065 | CHEMBL1826 | CHEMBL2627 | CHEMBL354 | CHEMBL4951 | CHEMBL4298 | CHEMBL5321 | CHEMBL5420 | CHEMBL5041 | CHEMBL5305 | CHEMBL5308 | CHEMBL5309 | CHEMBL5437 | CHEMBL6131 | CHEMBL5729 | CHEMBL5821 | CHEMBL5677 | CHEMBL6137 | CHEMBL1075073 | CHEMBL5956 | CHEMBL1075081 | CHEMBL1075082 | CHEMBL1255135 | CHEMBL1255147 | CHEMBL1255151 | CHEMBL1255155 | CHEMBL1287599 | CHEMBL1287606 | CHEMBL1287630 | CHEMBL1293264 | CHEMBL1293272 | CHEMBL1667679 | CHEMBL1667680 | CHEMBL1697675 | CHEMBL1744485 | CHEMBL1744490 | CHEMBL1795101 | CHEMBL1795106 | CHEMBL1795135 | CHEMBL1795152 | CHEMBL1795153 | CHEMBL1938227 | CHEMBL2094139 | CHEMBL3309036 | CHEMBL3309037 | CHEMBL3309038 | CHEMBL3313836 | CHEMBL3421521 | CHEMBL3559642 | CHEMBL3559674 | CHEMBL3596082 | CHEMBL3751655 | CHEMBL3885665 | CHEMBL4106139 | CHEMBL4295540 | CHEMBL4295613 | CHEMBL4295642 | CHEMBL4295719 | CHEMBL4296041 | CHEMBL4296169 | CHEMBL4630870 | CHEMBL4630871 | CHEMBL4879550 | CHEMBL5169221 | CHEMBL5169225 | CHEMBL5169227 | CHEMBL5291611 | CHEMBL5500282,"Dihydrofolate reductase | Beta-lactamase TEM | DNA gyrase subunit B | Dihydrofolate reductase type 1 | Escherichia coli | Beta-lactamase OXA-1 | DNA polymerase I | Beta lactamase TEM-152 | Mobilization protein A | Beta-lactamase TEM-125 | Beta-lactamase ACC-4 | Plasmid efflux fluoroquinolone | CMT-type beta lactamase | Class A carbapenemase KPC-2 | Beta-lactamase CTX-M | Type II restriction enzyme EcoRI | Tetracycline resistance protein, class B | Aspartase | Thymidylate synthase | Beta-lactamase SCO-1 | Beta-lactamase SHV-1 | SHV-5 extended spectrum beta-lactamase | DNA primase TraC | Beta-lactamase OXA-7 | Metallo-beta-lactamase | AmpC | BlaVIM-1 | Beta-lactamase TEM-1 | Beta-lactamase SHV-11 | Beta-lactamase CTX-M-14 | Beta-galactosidase | Chaperone protein dnaK | Beta-lactamase CTX-M-16 | Beta-lactamase CTX-M-27 | Beta-lactamase Toho-1 | Beta-lactamase OXA-2 | Beta-lactamase pse-1 | Peptide deformylase | Gyrase B | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | Phospho-2-dehydro-3-deoxyheptonate aldolase | Thymidylate synthase (EC 2.1.1.45) (TS) (TSase) | Met repressor | DNA gyrase | Cell shape peptidoglycan synthetase penicillin-binding protein 2 | Chaperone protein PapD | Metallo-beta-lactamase VIM-19 | Toxin ParE | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Phospho-N-acetylmuramoyl-pentapeptide-transferase | Bifunctional protein GlmU | Microcin C7 self-immunity protein MccF | Aminoglycoside 3'-phosphotransferase | Beta-lactamase | GroEL/GroES | Beta-lactamase NDM-1 | Metallo-beta-lactamase NDM-4 | Alpha-galactosidase | Beta-lactamase SHV-12 | DNA-directed RNA polymerase | DNA repair protein RecN | LexA repressor | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Glutamate 5-kinase | Proline--tRNA ligase | Carbon storage regulator | 23S rRNA methylase leader peptide | Peptidoglycan D,D-transpeptidase FtsI",SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX,,,False,beta_lactam_resistance | cell_wall_biosynthesis | dna_replication | folate_metabolism | protein_synthesis | rna_transcription | virulence,,,,,,,,,,,,,,
564,species,Escherichia fergusonii,1,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia fergusonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,3,1.0,0,4,LOW,7.154615356913663,0,,,,,,False,,,,,,,,,,,,,,,
1499973,species,Escherichia marmotae,1,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia marmotae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,2,0.0,3,1,LOW,17.35820750190013,0,,,,,,False,,,,,,,,,,,,,,,
2608867,species,Escherichia ruysiae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia ruysiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
39488,species,Eubacterium hallii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum; Anaerobutyricum hallii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,3,0.0,0,2,LOW,5.2574953720277815,0,,,,,,False,,,,,,,,,,,,,,,
41202,species,Ewingella americana,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Ewingella; Ewingella americana,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,7,LOW,8.317766166719343,1,CHEMBL2366705,Ewingella americana,ORGANISM,,,False,,,,,,,,,,,,,,,
33987,species,Exiguobacterium aurantiacum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Caryophanales incertae sedis; Caryophanales Family XII. Incertae Sedis; Exiguobacterium; Exiguobacterium aurantiacum,no rank; cellular root; domain; kingdom; phylum; class; order; no rank; no rank; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
178214,species,Facklamia hominis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Facklamia; Facklamia hominis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,5,LOW,6.186208623900495,0,,,,,,False,,,,,,,,,,,,,,,
853,species,Faecalibacterium prausnitzii,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium; Faecalibacterium prausnitzii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,10,3.0,1,1,MEDIUM,19.670335068474127,0,,,,,,False,,,,,,,,,,,,,,,
236753,species,Fastidiosipila sanguinis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Fastidiosipila; Fastidiosipila sanguinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
938288,species,Fenollaria massiliensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriales incertae sedis; Fenollaria; Fenollaria massiliensis,no rank; cellular root; domain; kingdom; phylum; class; order; no rank; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
143361,species,Filifactor alocis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Filifactoraceae; Filifactor; Filifactor alocis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,0,4,LOW,3.80666248977032,0,,,,,,False,,,,,,,,,,,,,,,
1260,species,Finegoldia magna,2,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Finegoldia; Finegoldia magna,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,4.0,3,18,MEDIUM,19.56867730598637,1,CHEMBL614615,Finegoldia magna,ORGANISM,,,False,,,,,,,,,,,,,,,
996,species,Flavobacterium columnare,1,8,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; Flavobacterium columnare,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,2,0,LOW,6.87935580446044,1,CHEMBL4296571,Flavobacterium columnare,ORGANISM,,,False,,,,,,,,,,,,,,,
986,species,Flavobacterium johnsoniae,2,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; Flavobacterium johnsoniae,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,1,CHEMBL612747,Flavobacterium johnsoniae,ORGANISM,,,False,,,,,,,,,,,,,,,
238,species,Flavobacterium meningosepticum,3,14,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Elizabethkingia; Elizabethkingia meningoseptica,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,4,LOW,4.382026634673881,4,CHEMBL612601 | CHEMBL6043 | CHEMBL1287595 | CHEMBL1667692,Elizabethkingia meningoseptica | Prolyl endopeptidase | GOB-1 metallo-beta-lactamase | Metallo-beta-lactamase type 2,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
96345,species,Flavobacterium psychrophilum,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; Flavobacterium psychrophilum,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,0,6.0,2,2,LOW,10.483494030119283,0,,,,,,False,,PDG000000078.53.metadata.tsv,440.0,JIP02/86 | CSF259-93 | FPG101 | FPG3 | strain 950106-1/1 | THC 02-90 | TN | TR | phage resistant V4-24 | phage resistant V4-33,"ERS610204,""GCA_000064305"",""JIP02/86"" | CSF259-93,""Flavobacterium psychrophilum S1"" | CP007206,""FPG101"" | ATCC:49418,""CP007207"",""FPG3"" | Flavobacterium psychrophilum strain 950106-1/1,""strain 950106-1/1"" | THC 02-90 wild-type,""THC 02-90"" | THC 02-90 Passaged,""TN"" | THC 02-90 Rifampicin Passaged,""TR"" | Flavobacterium psychrophilum strain V4-24,""phage resistant V4-24"" | Flavobacterium psychrophilum strain V4-33,""phage resistant V4-33""",SAMEA3138269 | SAMN02770278 | SAMN03290989 | SAMN03290988 | SAMN02903962 | SAMN03080593 | SAMN03081545 | SAMN03081592 | SAMN02900760 | SAMN02900764,PRJNA19979 | PRJNA245044 | PRJNA236036 | PRJNA236029 | PRJNA254457 | PRJNA262099 | PRJNA262165 | PRJNA262168 | PRJNA254203 | PRJNA254206,GCA_000064305.2 | GCA_000739395.1 | GCA_000754365.1 | GCA_000754405.1 | GCA_000767095.1 | GCA_000801615.1 | GCA_000801695.1 | GCA_000801715.1 | GCA_000831185.1 | GCA_000831205.1,JRWD00000000.1 | JRWE00000000.1 | JRWF00000000.1,1993 | 2008 | 1995-03-01 | 1990,USA: Idaho | Canada | USA: Washington | Denmark | USA:Oregon | USA:Washington,Oncorhynchus mykiss (rainbow trout) | Oncorhynchus kisutch (Coho salmon) | Oncorhynchus kisutch (Coho Salmon),kidney systemic disease,"Trout Farm | fish with kidney, systemic disease | diseased host | freshwater farm | parent strain THC 02-90 passaged without rifampicin | parent strain THC 02-90 passaged with rifampicin | from Flavobacterium psychrophilum strain 950106-1/1",
292800,species,Flavonifractor plautii,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor; Flavonifractor plautii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,5,LOW,5.950642552587727,1,CHEMBL6195242,Flavonifractor plautii,ORGANISM,,,False,,,,,,,,,,,,,,,
657445,species,Francisella noatunensis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella noatunensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,2,0,LOW,6.87935580446044,0,,,,,,False,,,,,,,,,,,,,,,
264,subspecies,Francisella novicida,1,9,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella tularensis; Francisella tularensis subsp. novicida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species; subspecies,Bacteria,5,6,0.0,10,2,MEDIUM,26.092856976738123,1,CHEMBL6195085,Francisella novicida,ORGANISM,,,False,,,,,,,,,,,,,,,
2016517,species,Francisella opportunistica,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella opportunistica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
28110,species,Francisella philomiragia,2,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella philomiragia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,1,2,LOW,13.117680429499949,0,,,,,,False,,,,,,,,,,,,,,,
2599927,species,Francisella salimarina,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella salimarina,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
263,species,Francisella tularensis,1,68,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella; Francisella tularensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,60,55,7.0,75,87,HIGH,58.80943712816823,1,CHEMBL5291655,Francisella tularensis,ORGANISM,,,False,,,,,,,,,,,,,,,
651822,species,Fretibacterium fastidiosum,1,1,True,False,False,root; cellular organisms; Bacteria; Thermotogati; Synergistota; Synergistia; Synergistales; Aminobacteriaceae; Fretibacterium; Fretibacterium fastidiosum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
849,species,Fusobacterium gonidiaformans,1,2,True,False,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium gonidiaformans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,4,LOW,6.00388706710654,0,,,,,,False,,,,,,,,,,,,,,,
850,species,Fusobacterium mortiferum,1,2,True,True,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium mortiferum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,1,CHEMBL614415,Fusobacterium mortiferum,ORGANISM,,,False,,,,,,,,,,,,,,,
859,species,Fusobacterium necrophorum,1,20,True,True,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium necrophorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,9,2,5.0,4,186,MEDIUM,29.36799435546171,1,CHEMBL614417,Fusobacterium necrophorum,ORGANISM,,,False,,,,,,,,,,,,,,,
851,species,Fusobacterium nucleatum,1,35,True,True,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,9,27,10.0,18,102,MEDIUM,43.35966833216038,1,CHEMBL614609,Fusobacterium nucleatum,ORGANISM,,,False,,,,,,,,,,,,,,,
856,species,Fusobacterium varium,1,2,True,True,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium varium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,1,CHEMBL614416,Fusobacterium varium,ORGANISM,,,False,,,,,,,,,,,,,,,
750,species,Gallibacterium anatis,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Gallibacterium; Gallibacterium anatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,4,LOW,3.688879454113936,0,,,,,,False,,,,,,,,,,,,,,,
2702,species,Gardnerella vaginalis,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Gardnerella; Gardnerella vaginalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,4,5.0,6,20,MEDIUM,25.58035501343084,1,CHEMBL614994,Gardnerella vaginalis,ORGANISM,,,False,,,,,,,,,,,,,,,
1379,species,Gemella haemolysans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Gemellaceae; Gemella; Gemella haemolysans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,2.0,1,15,MEDIUM,10.514990744055565,0,,,,,,False,,,,,,,,,,,,,,,
29391,species,Gemella morbillorum,2,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Gemellaceae; Gemella; Gemella morbillorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,2.0,0,32,MEDIUM,12.86077001571492,1,CHEMBL6195252,Gemella morbillorum,ORGANISM,,,False,,,,,,,,,,,,,,,
84135,species,Gemella sanguinis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Gemellaceae; Gemella; Gemella sanguinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,8,LOW,4.969813299576001,1,CHEMBL6195253,Gemella sanguinis,ORGANISM,,,False,,,,,,,,,,,,,,,
738,species,Glaesserella parasuis,2,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Glaesserella; Glaesserella parasuis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,1,CHEMBL5465476,Haemophilus parasuis,ORGANISM,,,False,,,,,,,,,,,,,,,
66228,species,Gleimia europaea,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Gleimia; Gleimia europaea,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
13076,species,Globicatella sanguinis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Globicatella; Globicatella sanguinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,3,LOW,6.87935580446044,0,,,,,,False,,,,,,,,,,,,,,,
2055,species,Gordona terrae,2,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae; Gordonia; Gordonia terrae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
2054,species,Gordonia bronchialis,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae; Gordonia; Gordonia bronchialis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,0.0,2,11,MEDIUM,16.81898240361244,0,,,,,,False,,,,,,,,,,,,,,,
589162,species,Gordonia crocea,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae; Gordonia; Gordonia crocea,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
1701090,species,Gordonia hongkongensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae; Gordonia; Gordonia hongkongensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
84595,species,Gordonia polyisoprenivorans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae; Gordonia; Gordonia polyisoprenivorans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
46124,species,Granulicatella adiacens,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella adiacens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,35,MEDIUM,6.356107660695891,0,,,,,,False,,,,,,,,,,,,,,,
137732,species,Granulicatella elegans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella elegans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,3,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
673,species,Grimontia hollisae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia; Grimontia hollisae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
1549855,species,Haematospirillum jordaniae,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Novispirillaceae; Haematospirillum; Haematospirillum jordaniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,3,1,LOW,11.78350206951907,0,,,,,,False,,,,,,,,,,,,,,,
29501,species,Haemobartonella felis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma haemofelis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,0,0,LOW,2.19722457733622,0,,,,,,False,,,,,,,,,,,,,,,
726,species,Haemophilus haemolyticus,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus haemolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,2.0,4,0,LOW,12.323855681186558,1,CHEMBL6195258,Haemophilus haemolyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
727,species,Haemophilus influenzae,1,157,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,22,29,51.0,158,241,HIGH,61.48151518312376,2,CHEMBL355 | CHEMBL5169226,Haemophilus influenzae | Multidrug resistance protein HmrM,ORGANISM | SINGLE PROTEIN,,,False,,PDG000000139.197.metadata.tsv,16985.0,86-028NP | PittAA | 7P49H1 | 6P18H1 | NT127 | RdAW | F3031 | F3047 | 10810 | R2846,"86-028NP,""CP000057"" | AAZG,""PittAA"" | 7P49H1,""ABWV"" | 6P18H1,""ABWW"" | ACSL,""NT127"" | ACSM,""RdAW"" | ERS610277,""F3031"",""GCA_000197875"" | ERS379986,""F3047"",""GCA_000200475"" | 10810,""ERS610318"",""GCA_000210875"" | CP002276,""R2846""",SAMN02603157 | SAMN02393739 | SAMN02393768 | SAMN02393767 | SAMN02595334 | SAMN02595335 | SAMEA3138342 | SAMEA2272570 | SAMEA3138383 | SAMN02604260,PRJNA11752 | PRJNA16399 | PRJNA29319 | PRJNA29317 | PRJNA39125 | PRJNA39127 | PRJNA50729 | PRJEA61001 | PRJNA50409 | PRJNA9620,GCA_000012185.1 | GCA_000169795.1 | GCA_000173315.1 | GCA_000173335.1 | GCA_000175435.1 | GCA_000175455.1 | GCA_000197875.1 | GCA_000200475.1 | GCA_000210875.1 | GCA_000165575.1,AAZG00000000.1 | ABWV00000000.1 | ABWW00000000.1 | ACSL00000000.1 | ACSM00000000.1,,,,,,
729,species,Haemophilus parainfluenzae,1,9,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parainfluenzae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,1.0,3,43,MEDIUM,18.170381388881715,1,CHEMBL614408,Haemophilus parainfluenzae,ORGANISM,,,False,,,,,,,,,,,,,,,
732,species,Haemophilus paraphrophilus,3,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter aphrophilus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,8,LOW,10.514990744055565,1,CHEMBL6195101,Aggregatibacter aphrophilus,ORGANISM,,,False,,,,,,,,,,,,,,,
123834,species,Haemophilus quentini,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus quentini,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,1,LOW,6.186208623900495,0,,,,,,False,,,,,,,,,,,,,,,
731,species,Haemophilus somnus,2,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Histophilus; Histophilus somni,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,3.0,2,1,LOW,8.958797346140276,1,CHEMBL4523078,Histophilus somni,ORGANISM,,,False,,,,,,,,,,,,,,,
569,species,Hafnia alvei,1,17,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Hafnia; Hafnia alvei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,2,1.0,10,16,MEDIUM,27.28846153139354,2,CHEMBL613194 | CHEMBL4630867,Hafnia alvei | Lysine decarboxylase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
546367,species,Hafnia paralvei,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Hafnia; Hafnia paralvei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
502829,species,Halomonas hamiltonii,2,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Vreelandella; Vreelandella hamiltonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,2,LOW,8.958797346140274,0,,,,,,False,,,,,,,,,,,,,,,
502821,species,Halomonas stevensii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Vreelandella; Vreelandella stevensii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
44935,species,Halomonas venusta,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Vreelandella; Vreelandella venusta,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
40091,species,Helcococcus kunzii,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Helcococcus; Helcococcus kunzii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,5,LOW,9.65194452670022,0,,,,,,False,,,,,,,,,,,,,,,
72026,species,Helcococcus ovis,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Helcococcus; Helcococcus ovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,3,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
212,species,Helicobacter acinonychis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter acinonychis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
37372,species,Helicobacter bilis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter bilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,5,1.0,2,1,LOW,12.94778139270455,0,,,,,,False,,,,,,,,,,,,,,,
123841,species,Helicobacter canadensis,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter canadensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,5,0,LOW,13.810827610059892,0,,,,,,False,,,,,,,,,,,,,,,
29419,species,Helicobacter canis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,2,4,LOW,13.17092494401876,0,,,,,,False,,,,,,,,,,,,,,,
138563,species,Helicobacter cetorum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter cetorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
213,species,Helicobacter cinaedi,1,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter cinaedi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,2,0.0,6,23,MEDIUM,22.64119309136524,0,,,,,,False,,,,,,,,,,,,,,,
214,species,Helicobacter felis,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter felis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,2,3.0,7,1,LOW,24.32581835411545,0,,,,,,False,,,,,,,,,,,,,,,
35817,species,Helicobacter heilmannii,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter heilmannii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,6,0.0,0,7,LOW,16.706070298190653,0,,,,,,False,,,,,,,,,,,,,,,
32025,species,Helicobacter hepaticus,1,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter hepaticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,8,2.0,3,0,LOW,15.720370114944332,0,,,,,,False,,,,,,,,,,,,,,,
217,species,Helicobacter mustelae,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter mustelae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,2,0,LOW,14.04639368137266,0,,,,,,False,,,,,,,,,,,,,,,
35818,species,Helicobacter pullorum,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pullorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,2.0,6,0,LOW,15.222612188617116,0,,,,,,False,,,,,,,,,,,,,,,
210,species,Helicobacter pylori,1,320,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,92,106,62.0,518,565,HIGH,78.03326742281443,2,CHEMBL612600 | CHEMBL5325,Helicobacter pylori | Urease,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
104628,species,Helicobacter suis,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter suis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,3,0.0,1,3,LOW,16.17795122419151,0,,,,,,False,,,,,,,,,,,,,,,
50960,species,Helicobacter trogontum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter trogontum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,2,LOW,7.167037876912221,0,,,,,,False,,,,,,,,,,,,,,,
2974574,species,Helicobacter zhangjianzhongii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter zhangjianzhongii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
863372,species,Herbaspirillum huttiense,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum; Herbaspirillum huttiense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,4,LOW,7.847762537473608,0,,,,,,False,,,,,,,,,,,,,,,
964,species,Herbaspirillum seropedicae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum; Herbaspirillum seropedicae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,0,,,,,,False,,,,,,,,,,,,,,,
1096246,species,Hungatella effluvii,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella; Hungatella effluvii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,2,LOW,6.643789733147672,0,,,,,,False,,,,,,,,,,,,,,,
154046,species,Hungatella hathewayi,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella; Hungatella hathewayi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,1,LOW,4.852030263919617,1,CHEMBL6195198,Clostridium hathewayi,ORGANISM,,,False,,,,,,,,,,,,,,,
89093,species,Ignavigranum ruoffiae,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Ignavigranum; Ignavigranum ruoffiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,1,LOW,8.55333223803211,0,,,,,,False,,,,,,,,,,,,,,,
171674,species,Inquilinus limosus,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus; Inquilinus limosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,1,LOW,6.238324625039508,1,CHEMBL6195272,Inquilinus limosus,ORGANISM,,,False,,,,,,,,,,,,,,,
262209,species,Janibacter melonis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Intrasporangiaceae; Janibacter; Janibacter melonis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
206506,species,Kerstersia gyiorum,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Kerstersia; Kerstersia gyiorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,0,3.0,0,7,LOW,12.63567086014087,0,,,,,,False,,,,,,,,,,,,,,,
504,species,Kingella kingae,1,18,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella; Kingella kingae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,5.0,10,53,MEDIUM,27.18659833517163,0,,,,,,False,,,,,,,,,,,,,,,
1522312,species,Kingella negevensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella; Kingella negevensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
548,species,Klebsiella aerogenes,3,23,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella aerogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,8,19,MEDIUM,20.455745856587363,4,CHEMBL3853 | CHEMBL612508 | CHEMBL1744486 | CHEMBL2321620,Dihydrofolate reductase | Klebsiella aerogenes | Beta-lactamase OXA-9 | AcrB protein,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance | folate_metabolism,,,,,,,,,,,,,,
2489010,species,Klebsiella africana,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella africana,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
39824,species,Klebsiella granulomatis,2,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella granulomatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,0,,,,,,False,,,,,,,,,,,,,,,
2058152,species,Klebsiella grimontii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella grimontii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
1134687,species,Klebsiella michiganensis,1,11,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella michiganensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,3,5.0,4,0,LOW,22.227343233722685,0,,,,,,False,,,,,,,,,,,,,,,
571,species,Klebsiella oxytoca,1,36,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella oxytoca,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,11,4,9.0,23,56,MEDIUM,39.30643094201668,3,CHEMBL614441 | CHEMBL5012 | CHEMBL3562180,Klebsiella oxytoca | Beta-lactamase | Carbapenem-hydrolyzing beta-lactamase KPC,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,PDG000000030.1285.metadata.tsv,3022.0,Oct-43 | Oct-45 | 11492-1 | 10-5248 | MGH 42 | MGH 28 | BRL6-2 | KA-2 | OK-1 | G54,"52139,""Oct-43"" | 52143,""Oct-45"" | 11492-1,""AIEM"" | 10-5248,""52149"" | Klebsiella oxytoca MGH 42,""MGH 42"",""SRS420811"" | Klebsiella oxytoca MGH 28,""MGH 28"",""SRS420809"" | ARVT,""BRL6-2"",""SRS712711"" | JAKX,""KA-2"" | JAKY,""OK-1"" | G54,""Klebsiella oxytoca G54"",""SRS517209""",SAMN02463894 | SAMN02463895 | SAMN02471877 | SAMN02463897 | SAMN02138582 | SAMN02138568 | SAMN02597163 | SAMN02641585 | SAMN02641584 | SAMN02381110,PRJNA52139 | PRJNA52143 | PRJNA81141 | PRJNA52149 | PRJNA201957 | PRJNA201943 | PRJNA185290 | PRJNA181051 | PRJNA181050 | PRJNA223655,GCA_000247855.1 | GCA_000247875.1 | GCA_000252915.3 | GCA_000269585.1 | GCA_000492815.1 | GCA_000492955.1 | GCA_000507385.1 | GCA_000527215.1 | GCA_000527235.1 | GCA_000607265.1,AGDJ00000000.1 | AGDL00000000.1 | AIEM00000000.1 | AKCF00000000.1 | AYIW00000000.1 | AYJD00000000.1 | ARVT00000000.1 | JAKX00000000.1 | JAKY00000000.1 | JHPN00000000.1,missing | 2005 | 2012,not provided | USA: Maryland | USA,Homo sapiens | Mus musculus,,peri-anal swab culture | respiratory | Tissue | Intestinal mucosa tissue,
2587529,species,Klebsiella pasteurii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pasteurii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
573,species,Klebsiella pneumoniae,1,476,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae complex; Klebsiella pneumoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,156,46,180.0,355,876,HIGH,78.32358073568739,23,CHEMBL350 | CHEMBL5094 | CHEMBL6132 | CHEMBL6053 | CHEMBL1075174 | CHEMBL1255121 | CHEMBL1255144 | CHEMBL1287604 | CHEMBL1287629 | CHEMBL1641338 | CHEMBL1641358 | CHEMBL1667693 | CHEMBL1667694 | CHEMBL1667695 | CHEMBL1667696 | CHEMBL1667697 | CHEMBL1744492 | CHEMBL2189123 | CHEMBL4295603 | CHEMBL4523936 | CHEMBL4524002 | CHEMBL5169233 | CHEMBL6066823,"Klebsiella pneumoniae | Beta-lactamase SHV-1 | Carbapenem-hydrolyzing beta-lactamase KPC | Class A carbapenemase | Beta-lactamase SHV-5 | Beta-lactamase SHV-72 | Beta-lactamase SHV-55 | Beta-lactamase OXA-48 | AmpC | Class C beta-lactamase CMY-36 | Beta-lactamase | Extended spectrum beta-lactamase CTX-M-71 | Beta-lactamase AH27 CTX-M-15 | Metallo-beta-lactamase type 2 | Metallo-beta-lactamase VIM-2 | Metallo-beta-lactamase | Beta lactamase TEM-1 | Arylsulfatase | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | DNA gyrase | UDP-galactopyranose mutase | 1-deoxy-D-xylulose-5-phosphate synthase",ORGANISM | SINGLE PROTEIN | PROTEIN COMPLEX,,,False,beta_lactam_resistance | dna_replication,,,,,,,,,,,,,,
1463165,species,Klebsiella quasipneumoniae,1,11,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae complex; Klebsiella quasipneumoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,10,0,2.0,10,4,MEDIUM,25.387719944955656,0,,,,,,False,,,,,,,,,,,,,,,
2026240,species,Klebsiella quasivariicola,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae complex; Klebsiella quasivariicola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,1.0,1,0,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
39831,subspecies,Klebsiella rhinoscleromatis,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae complex; Klebsiella pneumoniae; Klebsiella pneumoniae subsp. rhinoscleromatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species; subspecies,Bacteria,0,0,0.0,0,17,MEDIUM,2.8903717578961645,0,,,,,,False,,,,,,,,,,,,,,,
2587528,species,Klebsiella spallanzanii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella spallanzanii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
244366,species,Klebsiella variicola,2,18,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae complex; Klebsiella variicola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,15,4,2.0,12,5,MEDIUM,32.73239946013339,1,CHEMBL4513195,Klebsiella variicola,ORGANISM,,,False,,,,,,,,,,,,,,,
51288,species,Kluyvera ascorbata,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera ascorbata,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,2,13,MEDIUM,9.5184131340757,0,,,,,,False,,,,,,,,,,,,,,,
580,species,Kluyvera cryocrescens,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera cryocrescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,4,5,LOW,15.619692547190889,0,,,,,,False,,,,,,,,,,,,,,,
61648,species,Kluyvera intermedia,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera intermedia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,0,2,LOW,7.572502985020384,1,CHEMBL6195276,Kluyvera intermedia,ORGANISM,,,False,,PDG000000040.131.metadata.tsv,48.0,NBRC 102594 | CAV1140 | CAV1149 | CAV1150 | CAV1297 | CAV1687 | CAV1286 | FOSA7093 | N2-1 | HR2,"NBRC 102594 | CAV1140,""Kluyvera intermedia KPC-producing clinical isolate CAV1140"",""SRS1182784"" | CAV1149,""Kluyvera intermedia KPC-producing clinical isolate CAV1149"",""SRS1182805"" | CAV1150,""Kluyvera intermedia KPC-producing clinical isolate CAV1150"",""SRS1182803"" | CAV1297,""Kluyvera intermedia KPC-producing clinical isolate CAV1297"",""SRS1182802"" | CAV1687,""Kluyvera intermedia KPC-producing clinical isolate CAV1687"",""SRS1182801"" | CAV1286,""Kluyvera intermedia KPC-producing clinical isolate CAV1286"",""SRS1182782"" | FOSA7093 | N2,""N2-1"" | HR2",SAMD00046734 | SAMN03733690 | SAMN03733694 | SAMN03733695 | SAMN03733696 | SAMN03733860 | SAMN03733693 | SAMN06458494 | SAMN13135738 | SAMN13135960,PRJDB286 | PRJNA246471 | PRJNA377218 | PRJNA580050 | PRJNA580036,GCA_001598315.1 | GCA_058381105.1 | GCA_016086575.2 | GCA_058381085.1 | GCA_058381125.1 | GCA_016086135.2 | GCA_002092975.1 | GCA_009649915.1 | GCA_009650415.1,BCYS00000000.1 | DBODGE000000000.1 | DACXZB000000000.2 | DBODGD000000000.1 | DBODGC000000000.1 | DACXYD000000000.2 | MWPR00000000.1,2009-08 | 2009-09 | 2012-08 | 2016-03-24 | 2017-04,USA:Virginia | Denmark | China:Guangzhou,Homo sapiens | flower,pancreatitis | Not applied,Perirectal | intraabdominal pancreas cyst | flower shop | flower,
2725494,species,Kluyvera sichuanensis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera sichuanensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
37923,species,Kocuria kristinae,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia kristinae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,2,13,MEDIUM,12.526567927628246,1,CHEMBL5465503,Rothia kristinae,ORGANISM,,,False,,,,,,,,,,,,,,,
223184,species,Kocuria marina,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Kocuria; Kocuria marina,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,2,LOW,5.493061443340549,0,,,,,,False,,,,,,,,,,,,,,,
71999,species,Kocuria palustris,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Kocuria; Kocuria palustris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,2,LOW,5.950642552587727,0,,,,,,False,,,,,,,,,,,,,,,
72000,species,Kocuria rhizophila,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Kocuria; Kocuria rhizophila,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,1,5,LOW,10.802672816507345,1,CHEMBL1075349,Kocuria rhizophila,ORGANISM,,,False,,,,,,,,,,,,,,,
1275,species,Kocuria rosea,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Kocuria; Kocuria rosea,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,2,11,MEDIUM,14.451858789480823,1,CHEMBL612510,Kocuria rosea,ORGANISM,,,False,,,,,,,,,,,,,,,
208223,species,Kosakonia cowanii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia; Kosakonia cowanii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,4,1,LOW,11.512925464970229,0,,,,,,False,,,,,,,,,,,,,,,
283686,species,Kosakonia radicincitans,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia; Kosakonia radicincitans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,0,,,,,,False,,,,,,,,,,,,,,,
138300,species,Kytococcus schroeteri,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Kytococcaceae; Kytococcus; Kytococcus schroeteri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,7,LOW,6.473890696352274,0,,,,,,False,,,,,,,,,,,,,,,
1276,species,Kytococcus sedentarius,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Kytococcaceae; Kytococcus; Kytococcus sedentarius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,0,,,,,,False,,,,,,,,,,,,,,,
1898203,species,Lachnospiraceae bacterium,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae; Lachnospiraceae bacterium,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; species,Bacteria,0,1,1.0,1,0,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
47715,species,Lacticaseibacillus rhamnosus,2,11,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus rhamnosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,2,2,LOW,12.829998357048169,1,CHEMBL2366698,Lacticaseibacillus rhamnosus,ORGANISM,,,False,,,,,,,,,,,,,,,
1590,species,Lactiplantibacillus plantarum,1,12,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus; Lactiplantibacillus plantarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,3,0.0,10,1,MEDIUM,23.27925827764787,1,CHEMBL614973,Lactiplantibacillus plantarum,ORGANISM,,,False,,,,,,,,,,,,,,,
1579,species,Lactobacillus acidophilus,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus acidophilus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,6,0.0,9,6,LOW,25.734317710927883,1,CHEMBL4296574,Lactobacillus acidophilus,ORGANISM,,,False,,,,,,,,,,,,,,,
1582,species,Lactobacillus casei,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus casei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,2,0.0,4,13,MEDIUM,18.37653291246253,4,CHEMBL2902 | CHEMBL5328 | CHEMBL613075 | CHEMBL5169211,Dihydrofolate reductase | Thymidylate synthase | Lacticaseibacillus casei | Energy-coupling factor transporter transmembrane protein EcfT,SINGLE PROTEIN | ORGANISM,,,False,folate_metabolism | membrane_function,,,,,,,,,,,,,,
47770,species,Lactobacillus crispatus,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus crispatus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,3,1.0,3,0,LOW,12.476649250079015,1,CHEMBL5465486,Lactobacillus crispatus,ORGANISM,,,False,,,,,,,,,,,,,,,
1584,species,Lactobacillus delbrueckii,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus delbrueckii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,4,3,LOW,11.512925464970229,1,CHEMBL4296575,Lactobacillus delbrueckii,ORGANISM,,,False,,,,,,,,,,,,,,,
1596,species,Lactobacillus gasseri,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus gasseri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,1.0,1,3,LOW,9.534161491043838,1,CHEMBL4888476,Lactobacillus gasseri,ORGANISM,,,False,,,,,,,,,,,,,,,
1587,species,Lactobacillus helveticus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus helveticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,1,1,LOW,10.22730867160378,0,,,,,,False,,,,,,,,,,,,,,,
147802,species,Lactobacillus iners,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus iners,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,1,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
33959,species,Lactobacillus johnsonii,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus johnsonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,2,1,LOW,12.424533248940005,1,CHEMBL615050,Lactobacillus johnsonii,ORGANISM,,,False,,,,,,,,,,,,,,,
1597,species,Lactobacillus paracasei,2,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus paracasei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,1,6,LOW,12.343117857454493,1,CHEMBL5291675,Lacticaseibacillus paracasei,ORGANISM,,,False,,,,,,,,,,,,,,,
1624,species,Lactobacillus salivarius,2,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Ligilactobacillus; Ligilactobacillus salivarius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,2,0.0,1,1,LOW,11.84916910403644,1,CHEMBL6195281,Lactobacillus salivarius,ORGANISM,,,False,,,,,,,,,,,,,,,
1281486,species,Lactococcus formosensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus formosensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,1,0,LOW,9.010913347279288,0,,,,,,False,,,,,,,,,,,,,,,
1363,species,Lactococcus garvieae,1,24,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus garvieae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,19,3,2.0,19,23,MEDIUM,36.49575195302976,1,CHEMBL6195282,Lactococcus garvieae,ORGANISM,,,False,,,,,,,,,,,,,,,
1358,species,Lactococcus lactis,1,34,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus lactis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,10,7,2.0,42,17,MEDIUM,39.72350262993319,1,CHEMBL613069,Lactococcus lactis,ORGANISM,,,False,,,,,,,,,,,,,,,
1940789,species,Lactococcus petauri,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus petauri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,0,LOW,9.903487552536127,0,,,,,,False,,,,,,,,,,,,,,,
168471,species,Laribacter hongkongensis,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Aquaspirillaceae; Laribacter; Laribacter hongkongensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,1.0,2,1,LOW,14.010254634756786,1,CHEMBL6195283,Laribacter hongkongensis,ORGANISM,,,False,,,,,,,,,,,,,,,
47671,species,Lautropia mirabilis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia; Lautropia mirabilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,2,LOW,5.950642552587727,0,,,,,,False,,,,,,,,,,,,,,,
1528099,species,Lawsonella clevelandensis,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Lawsonellaceae; Lawsonella; Lawsonella clevelandensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,1.0,0,8,LOW,10.021270588192513,0,,,,,,False,,,,,,,,,,,,,,,
29546,species,Lawsonia intracellularis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Lawsonia; Lawsonia intracellularis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,16.0,1,3,MEDIUM,13.291045674271832,0,,,,,,False,,,,,,,,,,,,,,,
83655,species,Leclercia adecarboxylata,1,16,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Leclercia; Leclercia adecarboxylata,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,0,1.0,12,26,MEDIUM,25.290518610653155,0,,,,,,False,,,,,,,,,,,,,,,
28082,species,Legionella anisa,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella anisa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,5,0.0,2,2,LOW,11.966952139692824,0,,,,,,False,,PDG000000123.58.metadata.tsv,206.0,Linanisette | WA-316-C3 | FDAARGOS_200 | A18089588 | A18089587 | A13026757 | A15103822 | A18118416 | A18118414 | D5641,"ERS610366,""GCA_000333755"",""Linanisette"" | ATCC:35292,""L. anisa ATCC35292"",""WA-316-C3"" | ATCC:35292D-5,""FDAARGOS_200"",""SRS1704426"" | A18089588,""SRS4975107"" | A18089587,""SRS4975104"" | A13026757,""SRS4975101"" | A15103822,""SRS4975100"" | A18118416,""SRS4975099"" | A18118414,""SRS4975098"" | D5641,""Legionella anisa (D5641)"",""SRS1310549""",SAMEA3138431 | SAMN04274764 | SAMN04875537 | SAMN12059531 | SAMN12059530 | SAMN12059524 | SAMN12059525 | SAMN12059537 | SAMN12059535 | SAMN04155524,PRJNA174470 | PRJNA285910 | PRJNA231221 | PRJNA541955 | PRJNA298088,GCA_000333755.1 | GCA_001467525.1 | GCA_002082905.2 | GCA_049529475.1 | GCA_049528795.1 | GCA_049529355.1 | GCA_049529295.1 | GCA_049529255.1 | GCA_049529235.1,CANP00000000.1 | LNXS00000000.1 | NBTX00000000.2 | DBHUHW000000000.1 | DBHUHH000000000.1 | DBHUHS000000000.1 | DBHUHR000000000.1 | DBHUHP000000000.1 | DBHUHO000000000.1,1980 | 2018 | 2013 | 2015,"USA: Los Angeles, California | USA:CA | USA: MD",Environment,Water was collected during a legionellosis outbreak,Tap water | tap water from hospital sink | environmental,
447,species,Legionella bozemanae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella bozemanae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,0,,,,,,False,,PDG000000126.21.metadata.tsv,31.0,WIGA | ATCC 33217 | NCTC11368 | 94163278 | 93RB164 | A16007296 | A16009035 | 2 (D4398) | 1 (D5751) | CDPH-003,"ATCC:33217,""L. bozemanii ATCC33217"",""WIGA"" | ATCC 33217,""ATCC33217"",""ATCC:33217"" | 963f4f90-3866-11e6-bcc0-3c4a9275d6c8,""ERS1234134"",""NCTC11368"",""NCTC:11368"" | 94163278,""ERS3005562"",""Leg_bozemanae_94163278"" | 93RB164,""RB164"",""SRS4752929"" | A16007296,""SRS4975103"" | A16009035,""SRS4975102"" | 2 (D4398),""Legionella bozemanii 2 (D4398)"",""SRS1310551"" | 1 (D5751),""Legionella bozemanii 1 (D5751)"",""SRS1310550"" | CDPH-003,""SRS4774315""",SAMN04274766 | SAMN03486950 | SAMEA4063024 | SAMEA5198079 | SAMN11609323 | SAMN12059526 | SAMN12059527 | SAMN04155526 | SAMN04155525 | SAMN11637630,PRJNA285910 | PRJNA281295 | PRJEB6403 | PRJEB24896 | PRJNA541955 | PRJNA298088,GCA_001467045.1 | GCA_001648595.1 | GCA_900450575.1 | GCA_900640155.1 | GCA_049529495.1 | GCA_049529435.1 | GCA_049529375.1 | GCA_059283605.1,LNXU00000000.1 | LBAW00000000.1 | UGGY00000000.1 | CAAAJB000000000.1 | DBHUHV000000000.1 | DBHUHT000000000.1 | DBHUHU000000000.1 | DBPWFI000000000.1,1957 | 1900/1980 | 1993 | 2016 | 2009,"USA: Key West, Florida | USA: IN | USA: MD | USA: WV | USA: CA",Homo sapiens,legionellosis,Lung tissue | lung | not available: to be reported later | clinical,not available: to be reported later
463,species,Legionella dumoffii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Fluoribacter; Fluoribacter dumoffii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,1,0,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
453,species,Legionella feeleii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella feeleii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,1,LOW,2.772588722239781,0,,,,,,False,,PDG000000124.13.metadata.tsv,18.0,WO-44C | ATCC 35072 | NCTC12022 | NCTC11978 | CDPH-009 | CDPH-008 | Legionella feeleii Sgp2 NCTC11978 | Legionella feeleii Sgp1 NCTC12022 | 1876859 | 1876858,"ATCC:35072,""L. feeleii ATCC35072"",""WO-44C"" | ATCC 35072,""ATCC35072"",""ATCC:35072"" | 78e261c0-652b-11e6-821c-3c4a9275d6c8,""ERS1324120"",""NCTC12022"",""NCTC:12022"" | ERS579197,""NCTC11978"",""NCTC11978-sc-2168717"",""NCTC:11978"" | CDPH-009,""SRS4774317"" | CDPH-008,""SRS4774310"" | Legionella feeleii Sgp2 NCTC11978,""NCTC:11978"",""SRS24585450"" | Legionella feeleii Sgp1 NCTC12022,""NCTC:12022"",""SRS24585449"" | 1876859,""SRS29686144"" | 1876858,""SRS29686143""",SAMN04274773 | SAMN03486951 | SAMEA4412671 | SAMEA3111976 | SAMN11637636 | SAMN11637635 | SAMN47752366 | SAMN47752365 | SAMN61121678 | SAMN61121677,PRJNA285910 | PRJNA281296 | PRJEB6403 | PRJNA541955 | PRJNA1245371 | PRJNA1482387,GCA_001467625.1 | GCA_001648615.1 | GCA_900452475.1 | GCA_900461565.1 | GCA_049528915.1,LNYB00000000.1 | LBHK00000000.1 | UASS00000000.1 | UGNY00000000.1 | DBHUHI000000000.1,1981 | 1967/1987 | 2013 | 2004 | 1985 | 1984 | 2025,Canada: Windsor | USA: CA | USA | Canada | United Kingdom,environmental | Homo sapiens,Legionellosis | Legionnaires’ disease,Grinding machine coolant fluid | Grinding Machine Coolant Fluid | not available: to be reported later | clinical | human | Clinical-isolate-Pick-4-Pus-from-right-lung | Clinical-isolate-Pick-3-Pus-from-right-lung,not available: to be reported later
464,species,Legionella gormanii,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Fluoribacter; Fluoribacter gormanii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,2,LOW,6.643789733147672,1,CHEMBL1287596,FEZ-1 protein,SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
455,species,Legionella jamestowniensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella jamestowniensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
456,species,Legionella jordanis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella jordanis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,2,LOW,9.416378455387452,0,,,,,,False,,,,,,,,,,,,,,,
450,species,Legionella longbeachae,1,8,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella longbeachae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,4,1.0,9,8,LOW,24.31920729540108,0,,,,,,False,,,,,,,,,,,,,,,
451,species,Legionella micdadei,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella micdadei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,1.0,3,9,LOW,17.551823065312842,0,,,,,,False,,,,,,,,,,,,,,,
29423,species,Legionella oakridgensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella oakridgensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,1,0,LOW,10.39720770839918,0,,,,,,False,,,,,,,,,,,,,,,
446,species,Legionella pneumophila,1,168,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella; Legionella pneumophila,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,53,41,13.0,190,154,HIGH,63.75185195749012,2,CHEMBL612505 | CHEMBL1667669,Legionella pneumophila | Outer membrane protein MIP,ORGANISM | SINGLE PROTEIN,,,False,membrane_function,PDG000000026.655.metadata.tsv,12396.0,Philadelphia 1 | Paris | Lens | Corby | 2300/99 Alcoy | ATCC 43290 | HL06041035 | Lorraine | LPE509 | 130b,"AE017354,""Philadelphia 1"" | ERS610187,""GCA_000048645"",""Paris"" | ERS610188,""GCA_000048665"",""Lens"" | CP000675,""Corby"" | 2300/99 Alcoy,""CP001828"" | ATCC 43290,""ATCC:43290"",""CP003192"" | ERS610359,""GCA_000306845"",""HL06041035"" | ERS610360,""GCA_000306865"",""Lorraine"" | CP003885,""LPE509"" | 130b,""ERS379877"",""GCA_000211115""",SAMN02603156 | SAMEA3138252 | SAMEA3138253 | SAMN02603241 | SAMN02604292 | SAMN02603182 | SAMEA3138424 | SAMEA3138425 | SAMN02604344 | SAMEA2272454,PRJNA22 | PRJNA13127 | PRJNA13126 | PRJNA17491 | PRJNA18743 | PRJNA78169 | PRJNA67919 | PRJNA67921 | PRJNA174371 | PRJEA51615,GCA_000008485.1 | GCA_000048645.1 | GCA_000048665.1 | GCA_000092545.1 | GCA_000092625.1 | GCA_000239175.1 | GCA_000306845.1 | GCA_000306865.1 | GCA_000347615.1 | GCA_000211115.2,CAFM00000000.1,,,,,,
144185,species,Leifsonia aquatica,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Leifsonia; Leifsonia aquatica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,5,LOW,6.186208623900495,0,,,,,,False,,,,,,,,,,,,,,,
61646,species,Lelliottia amnigena,2,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Lelliottia; Lelliottia amnigena,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,1,2,LOW,10.109525635947398,1,CHEMBL6195224,Enterobacter amnigenus,ORGANISM,,,False,,,,,,,,,,,,,,,
174,species,Leptospira borgpetersenii,1,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Leptospiria; Leptospirales; Leptospiraceae; Leptospira; Leptospira borgpetersenii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,13,4,4.0,1,1,MEDIUM,22.7623019639912,0,,,,,,False,,,,,,,,,,,,,,,
1193500,species,Leptospira idonii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Leptospiria; Leptospirales; Leptospiraceae; Leptospira; Leptospira idonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
173,species,Leptospira interrogans,1,44,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Leptospiria; Leptospirales; Leptospiraceae; Leptospira; Leptospira interrogans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,35,10,21.0,16,38,MEDIUM,45.53947484534691,0,,,,,,False,,,,,,,,,,,,,,,
29507,species,Leptospira kirschneri,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Leptospiria; Leptospirales; Leptospiraceae; Leptospira; Leptospira kirschneri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,1,1.0,1,2,LOW,15.197121971179785,0,,,,,,False,,,,,,,,,,,,,,,
28183,species,Leptospira santarosai,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Leptospiria; Leptospirales; Leptospiraceae; Leptospira; Leptospira santarosai,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
187101,species,Leptotrichia amnionii,1,1,True,False,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Sneathia; Sneathia vaginalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
157692,species,Leptotrichia goodfellowii,1,1,True,False,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Pseudoleptotrichia; Pseudoleptotrichia goodfellowii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
1246,species,Leuconostoc lactis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc; Leuconostoc lactis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,2,LOW,6.591673732008659,0,,,,,,False,,,,,,,,,,,,,,,
1245,species,Leuconostoc mesenteroides,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc; Leuconostoc mesenteroides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,1.0,1,5,LOW,13.117680429499949,2,CHEMBL1741173 | CHEMBL6195288,Glucose-6-phosphate 1-dehydrogenase | Leuconostoc mesenteroides,SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
33968,species,Leuconostoc pseudomesenteroides,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc; Leuconostoc pseudomesenteroides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,4,LOW,1.6094379124341005,0,,,,,,False,,,,,,,,,,,,,,,
1613,species,Limosilactobacillus fermentum,2,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; Limosilactobacillus fermentum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,0,LOW,8.317766166719343,2,CHEMBL3353 | CHEMBL613076,Glutamate racemase | Limosilactobacillus fermentum,SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
1598,species,Limosilactobacillus reuteri,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; Limosilactobacillus reuteri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,1.0,3,0,LOW,10.39720770839918,1,CHEMBL4296576,Limosilactobacillus reuteri,ORGANISM,,,False,,,,,,,,,,,,,,,
1642,species,Listeria innocua,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Listeriaceae; Listeria; Listeria innocua,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,14,5,MEDIUM,23.885342712771216,1,CHEMBL612636,Listeria innocua,ORGANISM,,,False,,PDG000000091.231.metadata.tsv,2158.0,Clip11262 | FSL J1-023 | ATCC 33091 | MOD1_LS888 | 9KSM | 12KSM | PNUSAL000003 | H8597 | H6330 | CFSAN046043,"Clip11262,""ERS610255"",""GCA_000195795"" | FSL J1-023,""SRS389353"" | 65129,""ATCC 33091"" | MOD1_LS888,""SRS649164"" | 9KSM,""LKSM9"" | 12KSM,""LKSM12"" | PNUSAL000003,""SRS951641"",""WGLMO0001707"" | H8597,""SRS1121846"" | H6330,""SRS1121845"" | 377a,""CFSAN046043"",""SRS1332179"",""U5""",SAMEA3138320 | SAMN01909077 | SAMN02299452 | SAMN02769797 | SAMN03381197 | SAMN03381211 | SAMN03760840 | SAMN04195168 | SAMN04195169 | SAMN04530873,PRJNA86 | PRJNA42853 | PRJNA65129 | PRJNA243331 | PRJNA276829 | PRJNA276836 | PRJNA212117,GCA_000195795.1 | GCA_000183905.1 | GCA_000241405.1 | GCA_000773035.1 | GCA_000960585.1 | GCA_000960735.1 | GCA_004636625.1 | GCA_004636725.1 | GCA_004636685.1 | GCA_004724745.1,ADXH00000000.1 | AGCN00000000.1 | JRYX00000000.1 | JZCS00000000.1 | JZCU00000000.1 | AAAXSJ000000000.1 | AAAXSL000000000.1 | AAAXSP000000000.1 | AABEAB000000000.1,missing | 2014-02-25 | 2012 | 2010-07 | 2010,not provided | USA | Austria | Argentina | Italy,Homo sapiens,,not provided | pet food | food processing environment | environmental swab sponge meat plant,
1638,species,Listeria ivanovii,1,8,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Listeriaceae; Listeria; Listeria ivanovii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,2.0,10,1,MEDIUM,21.31759977162441,1,CHEMBL5465487,Listeria ivanovii,ORGANISM,,,False,,,,,,,,,,,,,,,
1639,species,Listeria monocytogenes,1,285,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Listeriaceae; Listeria; Listeria monocytogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,105,92,31.0,322,349,HIGH,73.92922143210424,1,CHEMBL614974,Listeria monocytogenes,ORGANISM,,,False,,,,,,,,,,,,,,,
28031,species,Lysinibacillus fusiformis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Bacillaceae; Lysinibacillus; Lysinibacillus fusiformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,1,LOW,9.010913347279288,1,CHEMBL6066651,Lysinibacillus fusiformis,ORGANISM,,,False,,,,,,,,,,,,,,,
1855823,species,Macrococcus canis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Macrococcoides; Macrococcoides canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
69966,species,Macrococcus caseolyticus,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Macrococcoides; Macrococcoides caseolyticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,4,0,LOW,12.441638716842942,1,CHEMBL5291647,Macrococcus caseolyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
3039389,species,Macrococcus psychrotolerans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Macrococcus; Macrococcus psychrotolerans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1691903,species,Mangrovibacter phragmitis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Mangrovibacter; Mangrovibacter phragmitis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
85401,species,Mannheimia glucosida,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia glucosida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
75985,species,Mannheimia haemolytica,1,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,22.0,4,4,MEDIUM,22.40150660281518,1,CHEMBL612331,Mannheimia haemolytica,ORGANISM,,,False,,PDG000000101.96.metadata.tsv,3528.0,PHL213 | OVINE | BOVINE | H23 | USDA-ARS-USMARC-185 | USDA-ARS-USMARC-183 | M42548 | USMARC_2286 | D153 | D171,"AASA,""PHL213"" | ACZX,""OVINE"" | ACZY,""BOVINE"" | AOGP,""H23"" | USDA-ARS-USMARC-185 | USDA-ARS-USMARC-183 | CP005383,""M42548"" | SRS463805,""USMARC_2286"",""USMARC_SAM585"" | D153 | D171",SAMN02469325 | SAMN02436663 | SAMN02436661 | SAMN02393733 | SAMN02048830 | SAMN02048829 | SAMN02603277 | SAMN02262084 | SAMN02056285 | SAMN02056363,PRJNA221 | PRJNA40171 | PRJNA40173 | PRJNA181191 | PRJNA172854 | PRJNA196475 | PRJNA212438 | PRJNA181152 | PRJNA194566,GCA_000153645.1 | GCA_000176255.1 | GCA_000176275.1 | GCA_000341635.1 | GCA_000349785.2 | GCA_000349765.2 | GCA_000376645.1 | GCA_000439735.1 | GCA_000422145.1 | GCA_000427275.1,AASA00000000.1 | ACZX00000000.1 | ACZY00000000.1 | AOGP00000000.1,2007 | 2008-04-04 | 1991-06-20 | 2012-02-27 | 1983-12 | 1984-01,Canada | USA: Kansas | USA: Nebraska | USA: Iowa,sheep | cattle | Bos taurus | Bovine,,nasopharyngeal sample | feedlot | pneumonic lung specimen from feedlot steer,
1604354,species,Mannheimia massilioguelmaensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia massilioguelmaensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
33970,species,Melissococcus plutonius,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Melissococcus; Melissococcus plutonius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,1.0,0,0,LOW,3.465735902799726,0,,,,,,False,,,,,,,,,,,,,,,
66851,species,Methanobrevibacter oralis,1,1,True,False,False,root; cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; Methanobrevibacter oralis,no rank; cellular root; domain; kingdom; phylum; clade; class; order; family; genus; species,Bacteria,2,4,0.0,1,0,LOW,12.688498794774466,0,,,,,,False,,,,,,,,,,,,,,,
2173,species,Methanobrevibacter smithii,1,3,True,False,False,root; cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; Methanobrevibacter smithii,no rank; cellular root; domain; kingdom; phylum; clade; class; order; family; genus; species,Bacteria,3,4,0.0,2,2,LOW,16.96516491379052,0,,,,,,False,,,,,,,,,,,,,,,
1080712,species,Methanomassiliicoccus luminyensis,1,1,True,False,False,root; cellular organisms; Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus; Methanomassiliicoccus luminyensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,0,LOW,6.068425588244111,0,,,,,,False,,,,,,,,,,,,,,,
2317,species,Methanosphaera stadtmanae,1,1,True,False,False,root; cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanosphaera; Methanosphaera stadtmanae,no rank; cellular root; domain; kingdom; phylum; clade; class; order; family; genus; species,Bacteria,2,2,0.0,0,0,LOW,7.690286020676768,0,,,,,,False,,,,,,,,,,,,,,,
107400,species,Methylobacterium fujisawaense,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium; Methylobacterium fujisawaense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,1,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
39956,species,Methylobacterium mesophilicum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium; Methylobacterium mesophilicum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
426,species,Methylosinus trichosporium,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylocystaceae; Methylosinus; Methylosinus trichosporium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,0,0,LOW,6.473890696352274,0,,,,,,False,,,,,,,,,,,,,,,
199592,species,Microbacterium paraoxydans,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Microbacterium; Microbacterium paraoxydans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,4,LOW,7.154615356913663,0,,,,,,False,,,,,,,,,,,,,,,
86171,species,Micrococcus antarcticus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Micrococcus; Micrococcus antarcticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
1270,species,Micrococcus luteus,1,13,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Micrococcus; Micrococcus luteus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,16,13,MEDIUM,23.7365958554958,1,CHEMBL614421,Micrococcus luteus,ORGANISM,,,False,,,,,,,,,,,,,,,
566027,species,Micrococcus yunnanensis,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Micrococcus; Micrococcus yunnanensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
1126,species,Microcystis aeruginosa,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Microcystaceae; Microcystis; Microcystis aeruginosa,no rank; cellular root; domain; kingdom; clade; phylum; class; subclass; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,1,CHEMBL612942,Microcystis aeruginosa,ORGANISM,,,False,,,,,,,,,,,,,,,
665913,species,Mixta calida,2,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Mixta; Mixta calida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,2,LOW,5.493061443340549,0,,,,,,False,,,,,,,,,,,,,,,
158849,species,Moellerella wisconsensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Moellerella; Moellerella wisconsensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,2,2,LOW,8.671115273688494,0,,,,,,False,,,,,,,,,,,,,,,
476,species,Moraxella bovis,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella; Moraxella bovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,3,0,LOW,9.128696382935672,1,CHEMBL614428,Moraxella bovis,ORGANISM,,,False,,,,,,,,,,,,,,,
386891,species,Moraxella bovoculi,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella; Moraxella bovoculi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
480,species,Moraxella catarrhalis,2,47,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella; Moraxella catarrhalis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,12,3,9.0,43,30,MEDIUM,41.37878607327036,2,CHEMBL614429 | CHEMBL1744491,Moraxella catarrhalis | Beta-lactamase BRO-1,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
477,species,Moraxella lacunata,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella; Moraxella lacunata,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,6,LOW,5.41164605185504,0,,,,,,False,,,,,,,,,,,,,,,
478,species,Moraxella nonliquefaciens,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella; Moraxella nonliquefaciens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,9,LOW,4.382026634673881,0,,,,,,False,,,,,,,,,,,,,,,
34062,species,Moraxella osloensis,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Faucicola; Faucicola osloensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,2,17,MEDIUM,13.235463465156332,0,,,,,,False,,,,,,,,,,,,,,,
582,species,Morganella morganii,2,28,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Morganella; Morganella morganii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,1,7.0,13,57,MEDIUM,30.66109216057444,2,CHEMBL614443 | CHEMBL5764,Morganella morganii | Beta-lactamase,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
371674,species,Moryella indoligenes,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Moryella; Moryella indoligenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
36809,species,Mycobacterium abscessus,2,114,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides abscessus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,32,23,18.0,68,243,HIGH,56.07677044352214,1,CHEMBL612951,Mycobacteroides abscessus,ORGANISM,,,False,,,,,,,,,,,,,,,
1790,species,Mycobacterium asiaticum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium asiaticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,1,LOW,6.761572768804056,0,,,,,,False,,,,,,,,,,,,,,,
1764,species,Mycobacterium avium,1,115,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,57,82,134.0,72,389,HIGH,66.72728736731797,2,CHEMBL614982 | CHEMBL5457,Mycobacterium avium | Dihydrofolate reductase,ORGANISM | SINGLE PROTEIN,,,False,folate_metabolism,,,,,,,,,,,,,,
55883,species,Mycobacterium avium-intracellulare,1,9,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium avium-intracellulare,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,5,6,13.0,4,67,MEDIUM,30.54958025065529,1,CHEMBL612954,Mycobacterium avium-intracellulare,ORGANISM,,,False,,,,,,,,,,,,,,,
319705,subspecies,Mycobacterium bolletii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides abscessus; Mycobacteroides abscessus subsp. bolletii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species; subspecies,Bacteria,0,1,1.0,2,1,LOW,9.651944526700222,0,,,,,,False,,,,,,,,,,,,,,,
43348,species,Mycobacterium branderi,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium branderi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,1,LOW,8.958797346140276,0,,,,,,False,,,,,,,,,,,,,,,
146020,species,Mycobacterium brisbanense,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium brisbanense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,4,LOW,5.075173815233827,0,,,,,,False,,,,,,,,,,,,,,,
228230,species,Mycobacterium canariasense,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium canariasense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,6,LOW,1.9459101490553128,0,,,,,,False,,,,,,,,,,,,,,,
28045,species,Mycobacterium celatum,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium celatum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,0.0,1,4,LOW,13.592367006650065,0,,,,,,False,,,,,,,,,,,,,,,
222805,subspecies,Mycobacterium chimaera,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare; Mycobacterium intracellulare subsp. chimaera,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species; subspecies,Bacteria,1,2,5.0,3,32,MEDIUM,20.07992389376616,1,CHEMBL4665601,Mycobacterium intracellulare subsp. chimaera,ORGANISM,,,False,,,,,,,,,,,,,,,
339268,species,Mycobacterium colombiense,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium colombiense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,0,0.0,1,13,MEDIUM,11.649970676894547,0,,,,,,False,,,,,,,,,,,,,,,
258533,species,Mycobacterium cosmeticum,2,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium cosmeticum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,4,LOW,6.461468176353717,0,,,,,,False,,,,,,,,,,,,,,,
1802,species,Mycobacterium farcinogenes,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium farcinogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,5,LOW,6.643789733147672,0,,,,,,False,,,,,,,,,,,,,,,
1776,species,Mycobacterium flavescens,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium flavescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,1,LOW,5.545177444479562,1,CHEMBL613089,Mycolicibacterium flavescens,ORGANISM,,,False,,,,,,,,,,,,,,,
1766,species,Mycobacterium fortuitum,2,29,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium fortuitum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,17,13,13.0,16,117,MEDIUM,43.6935250244077,1,CHEMBL614983,Mycolicibacterium fortuitum,ORGANISM,,,False,,,,,,,,,,,,,,,
948102,species,Mycobacterium franklinii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides franklinii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
1777,species,Mycobacterium gastri,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium gastri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,0,0,LOW,5.78074351579233,0,,,,,,False,,,,,,,,,,,,,,,
36812,species,Mycobacterium genavense,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium genavense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,28,MEDIUM,6.139884552226255,0,,,,,,False,,,,,,,,,,,,,,,
134601,species,Mycobacterium goodii,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium goodii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,4,10,MEDIUM,10.445084834968872,0,,,,,,False,,,,,,,,,,,,,,,
1778,species,Mycobacterium gordonae,1,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium gordonae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,3,4.0,4,19,MEDIUM,23.965858188431927,1,CHEMBL614986,Mycobacterium gordonae,ORGANISM,,,False,,,,,,,,,,,,,,,
29311,species,Mycobacterium haemophilum,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium haemophilum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,0.0,0,30,MEDIUM,9.502412792729256,0,,,,,,False,,,,,,,,,,,,,,,
110505,species,Mycobacterium heckeshornense,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium heckeshornense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,1,LOW,6.186208623900495,0,,,,,,False,,,,,,,,,,,,,,,
83262,species,Mycobacterium immunogenum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides immunogenum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,1,7,LOW,9.704060527839234,0,,,,,,False,,,,,,,,,,,,,,,
33895,species,Mycobacterium interjectum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium interjectum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,1,0.0,1,2,LOW,9.416378455387452,1,CHEMBL612958,Mycobacterium interjectum,ORGANISM,,,False,,,,,,,,,,,,,,,
1767,species,Mycobacterium intracellulare,1,11,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium intracellulare,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,10,4,5.0,7,56,MEDIUM,32.44367274318562,1,CHEMBL612640,Mycobacterium intracellulare,ORGANISM,,,False,,,,,,,,,,,,,,,
912594,species,Mycobacterium iranicum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium iranicum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,8,LOW,10.46287474291655,0,,,,,,False,,,,,,,,,,,,,,,
1768,species,Mycobacterium kansasii,1,24,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium kansasii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,11,4.0,9,79,MEDIUM,34.88631404059566,1,CHEMBL614984,Mycobacterium kansasii,ORGANISM,,,False,,,,,,,,,,,,,,,
141349,species,Mycobacterium lentiflavum,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium lentiflavum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,3,1.0,2,8,LOW,18.78064090963589,0,,,,,,False,,,,,,,,,,,,,,,
1769,species,Mycobacterium leprae,1,47,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium leprae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,14,27,21.0,53,130,HIGH,51.831016797673605,2,CHEMBL2366041 | CHEMBL3301409,DNA | Mycobacterium leprae,NUCLEIC-ACID | ORGANISM,,,False,,,,,,,,,,,,,,,
64667,species,Mycobacterium lepraemurium,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium lepraemurium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,1,1.0,1,1,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
480418,species,Mycobacterium lepromatosis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium lepromatosis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,1.0,2,11,MEDIUM,11.443703995928276,0,,,,,,False,,,,,,,,,,,,,,,
53462,species,Mycobacterium mageritense,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium mageritense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,0,10,MEDIUM,8.1786387885907,1,CHEMBL612959,Mycolicibacterium mageritense,ORGANISM,,,False,,,,,,,,,,,,,,,
1780,species,Mycobacterium malmoense,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium malmoense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,4.0,4,21,MEDIUM,21.98172682655641,1,CHEMBL613090,Mycobacterium malmoense,ORGANISM,,,False,,,,,,,,,,,,,,,
1781,species,Mycobacterium marinum,1,35,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group; Mycobacterium marinum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,17,17,1.0,54,74,HIGH,45.9730507060917,1,CHEMBL614987,Mycobacterium marinum,ORGANISM,,,False,,,,,,,,,,,,,,,
701042,species,Mycobacterium marseillense,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC); Mycobacterium marseillense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,4,LOW,4.382026634673881,0,,,,,,False,,,,,,,,,,,,,,,
1962118,subspecies,Mycobacterium massiliense,1,5,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides abscessus; Mycobacteroides abscessus subsp. massiliense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species; subspecies,Bacteria,1,2,1.0,5,7,LOW,18.49295883718411,0,,,,,,False,,,,,,,,,,,,,,,
244292,species,Mycobacterium nebraskense,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium nebraskense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
1795,species,Mycobacterium neoaurum,2,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium neoaurum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,3,10,MEDIUM,15.767118728134225,0,,,,,,False,,,,,,,,,,,,,,,
1782,species,Mycobacterium nonchromogenicum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacter; Mycolicibacter nonchromogenicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,1.0,0,2,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
1305738,species,Mycobacterium orygis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium orygis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
53378,species,Mycobacterium paraffinicum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium paraffinicum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,3,1,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
240125,species,Mycobacterium parascrofulaceum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium parascrofulaceum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,1.0,0,3,LOW,2.772588722239781,1,CHEMBL5465482,Mycobacterium parascrofulaceum,ORGANISM,,,False,,,,,,,,,,,,,,,
43304,species,Mycobacterium peregrinum,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium peregrinum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,4,7,LOW,17.05810290944979,1,CHEMBL4296581,Mycolicibacterium peregrinum,ORGANISM,,,False,,,,,,,,,,,,,,,
1771,species,Mycobacterium phlei,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium phlei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,1.0,0,3,LOW,11.613603032723674,1,CHEMBL614985,Mycolicibacterium phlei,ORGANISM,,,False,,,,,,,,,,,,,,,
265949,species,Mycobacterium pseudoshottsii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group; Mycobacterium pseudoshottsii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
1783,species,Mycobacterium scrofulaceum,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium scrofulaceum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,2.0,0,5,LOW,9.534161491043836,1,CHEMBL613091,Mycobacterium scrofulaceum,ORGANISM,,,False,,,,,,,,,,,,,,,
722731,species,Mycobacterium shigaense,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium shigaense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,0.0,2,2,LOW,6.591673732008659,0,,,,,,False,,,,,,,,,,,,,,,
398694,species,Mycobacterium shinjukuense,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium shinjukuense,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,4,LOW,1.6094379124341005,0,,,,,,False,,,,,,,,,,,,,,,
133549,species,Mycobacterium shottsii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group; Mycobacterium shottsii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,1,0.0,2,0,LOW,7.572502985020385,0,,,,,,False,,,,,,,,,,,,,,,
1784,species,Mycobacterium simiae,1,7,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium simiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,7,4.0,4,12,MEDIUM,25.614516814019307,1,CHEMBL614988,Mycobacterium simiae,ORGANISM,,,False,,,,,,,,,,,,,,,
1787,species,Mycobacterium szulgai,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium szulgai,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,1.0,7,24,MEDIUM,21.07080348263138,1,CHEMBL612964,Mycobacterium szulgai,ORGANISM,,,False,,,,,,,,,,,,,,,
1788,species,Mycobacterium terrae,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacter; Mycolicibacter terrae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,3,2.0,2,9,LOW,19.696931641510048,1,CHEMBL613223,Mycolicibacter terrae,ORGANISM,,,False,,,,,,,,,,,,,,,
1797,species,Mycobacterium thermoresistibile,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium thermoresistibile,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,2,5,LOW,13.722572562305004,0,,,,,,False,,,,,,,,,,,,,,,
44467,species,Mycobacterium tilburgii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tilburgii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,5,LOW,1.791759469228055,0,,,,,,False,,,,,,,,,,,,,,,
47839,species,Mycobacterium triplex,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium triplex,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,2,1.0,2,5,LOW,14.739540861932603,0,,,,,,False,,,,,,,,,,,,,,,
1773,species,Mycobacterium tuberculosis,1,546,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,144,180,142.0,763,1656,HIGH,86.03371828725876,87,CHEMBL1849 | CHEMBL1877 | CHEMBL2006 | CHEMBL2030 | CHEMBL2031 | CHEMBL2361 | CHEMBL3640 | CHEMBL2011 | CHEMBL3345 | CHEMBL360 | CHEMBL3703 | CHEMBL4624 | CHEMBL4450 | CHEMBL4165 | CHEMBL4540 | CHEMBL4542 | CHEMBL4543 | CHEMBL4544 | CHEMBL4213 | CHEMBL5357 | CHEMBL5090 | CHEMBL5091 | CHEMBL5182 | CHEMBL5783 | CHEMBL6086 | CHEMBL5629 | CHEMBL5630 | CHEMBL5631 | CHEMBL5662 | CHEMBL5663 | CHEMBL5765 | CHEMBL5766 | CHEMBL5767 | CHEMBL6176 | CHEMBL6063 | CHEMBL6064 | CHEMBL6065 | CHEMBL6066 | CHEMBL6067 | CHEMBL6068 | CHEMBL6069 | CHEMBL6070 | CHEMBL1075170 | CHEMBL1075177 | CHEMBL1075096 | CHEMBL1169594 | CHEMBL1275214 | CHEMBL1287620 | CHEMBL1293297 | CHEMBL1667699 | CHEMBL1681615 | CHEMBL1697663 | CHEMBL1741171 | CHEMBL1741192 | CHEMBL1744527 | CHEMBL1744528 | CHEMBL1770044 | CHEMBL1772929 | CHEMBL1795155 | CHEMBL1795156 | CHEMBL1795161 | CHEMBL1795162 | CHEMBL1908385 | CHEMBL1921665 | CHEMBL1938225 | CHEMBL2016432 | CHEMBL2069157 | CHEMBL2146299 | CHEMBL2259247 | CHEMBL2259249 | CHEMBL2321612 | CHEMBL2346487 | CHEMBL2363965 | CHEMBL2364166 | CHEMBL2390811 | CHEMBL4295521 | CHEMBL4523102 | CHEMBL4630874 | CHEMBL4879548 | CHEMBL5169228 | CHEMBL5169229 | CHEMBL5169230 | CHEMBL5169231 | CHEMBL5465371 | CHEMBL5465373 | CHEMBL5465374 | CHEMBL5465376,"Enoyl-[acyl-carrier-protein] reductase [NADH] | Probable arabinosyltransferase A | DNA-directed RNA polymerase subunit beta | D-alanine--D-alanine ligase | Alanine racemase | Thymidylate kinase | Mycobacterial beta-ketoacyl-[acyl-carrier-protein] synthase III | Fatty acid synthase | 3-dehydroquinate dehydratase | Mycobacterium tuberculosis | Mycothiol S-conjugate amidase | Diacylglycerol acyltransferase/mycolyltransferase Ag85C | UDP-galactopyranose mutase | DNA gyrase subunit A | Phosphotyrosine-protein phosphatase PTPB | Low molecular weight protein-tyrosine phosphatase A | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 3-oxoacyl-[acyl-carrier-protein] synthase 1 | Cell division protein FtsZ | Cytochrome P450 130 | Sterol 14alpha-demethylase | 1-deoxy-D-xylulose-5-phosphate synthase | Medium/long-chain-fatty-acid--CoA/3-oxocholest-4-en-26-oate--CoA ligase | Medium/long-chain-fatty-acid--CoA ligase FadD17 | ATP phosphoribosyltransferase | Steroid C26-monooxygenase | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Beta-carbonic anhydrase 1 | Salicyl-AMP ligase / salicyl-S-ArCP synthetase | Deazaflavin-dependent nitroreductase | Peptide deformylase | Long-chain-fatty-acid--AMP ligase FadD28 | PROBABLE TRANSMEMBRANE CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC DEHYDRATASE) | NAD kinase | 4-hydroxy-tetrahydrodipicolinate synthase | DNA-binding transcriptional activator DevR/DosR | Dihydrofolate reductase | Secreted chorismate mutase | 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase | Carbonic anhydrase 2 | Pantothenate synthetase | Serine/threonine-protein kinase PknG | Mycothione reductase | 6,7-dimethyl-8-ribityllumazine synthase | Galactofuranosyltransferase GlfT2 | Purine nucleoside phosphorylase | 1,4-dihydroxy-2-naphthoyl-CoA synthase | Fructose-bisphosphate aldolase | Bifunctional protein GlmU | Isocitrate lyase | Mycocyclosin synthase | PYRAZINAMIDASE/NICOTINAMIDAS PNCA (PZase) | Protein RecA | Replicative DNA helicase DnaB | L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase | Ribose-5-phosphate isomerase B | HTH-type transcriptional regulator EthR | Epoxide hydrolase B | Hydrolase, alpha/beta hydrolase fold family | Flavin-dependent thymidylate synthase | Thymidylate synthase ThyA | Serine/threonine-protein kinase PknB | Phospho-N-acetylmuramoyl-pentapeptide-transferase | dTDP-4-dehydrorhamnose reductase | Serine/threonine-protein kinase PknF | Intracellular chorismate mutase | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | L-lysine-epsilon aminotransferase | DNA ligase A | O-acetylserine sulfhydrylase | Ribonucleoside-diphosphate reductase subunit alpha | 70S ribosome | ATP synthase | Thioredoxin reductase | Phosphotyrosine protein phosphatase | Cytochrome P450 | ATP-dependent Clp protease ATP-binding subunit ClpC1 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | Type II NADH:quinone oxidoreductase Ndh | Type II NADH:quinone oxidoreductase NdhA | Trehalose-binding lipoprotein LpqY | Pup--protein ligase | Phosphoserine phosphatase SerB2 | 4'-phosphopantetheinyl transferase PptT | (2Z,6E)-farnesyl diphosphate synthase | Decaprenyl diphosphate synthase",SINGLE PROTEIN | ORGANISM | PROTEIN NUCLEIC-ACID COMPLEX | PROTEIN COMPLEX,,,False,cell_wall_biosynthesis | dna_replication | energy_metabolism | fatty_acid_biosynthesis | folate_metabolism | membrane_function | rna_transcription,PDG000000034.491.metadata.tsv,10371.0,CDC1551 | BCG Pasteur 1173P2 | Tokyo 172 | H37Ra; ATCC 25177 | F11 | KZN MDR | KZN 4207 | KZN R506 | KZN V2475 | SUMu003,"AE000516,""CDC1551"" | BCG Pasteur 1173P2,""ERS380088"",""GCA_000009445"" | AP010918,""Tokyo 172"" | CP000611,""H37Ra; ATCC 25177"" | BROAD:SEQUENCING.SAMPLE:390.0,""F11"",""SRS005124"" | KZN 1435,""KZN MDR"",""PRJNA52007.KZN 1435"",""SRS281881"" | ACVS,""KZN 4207"" | ACVU,""KZN R506"" | ACVT,""KZN V2475"" | ADHS,""SUMu003""",SAMN02603992 | SAMEA2272684 | SAMD00060950 | SAMN02603128 | SAMN00103286 | SAMN00763683 | SAMN02471107 | SAMN02471040 | SAMN02471090 | SAMN02595382,PRJNA223 | PRJEA18059 | PRJDA31211 | PRJNA18883 | PRJNA15642 | PRJNA21055 | PRJNA39761 | PRJNA39767 | PRJNA39765 | PRJNA43607,GCA_000008585.1 | GCA_000009445.1 | GCA_000010685.1 | GCA_000016145.1 | GCA_000016925.1 | GCA_000023625.1 | GCA_000162975.1 | GCA_000163015.1 | GCA_000162995.1 | GCA_000177795.2,ACVS00000000.2 | ACVU00000000.2 | ACVT00000000.2 | ADHS00000000.1,,South Africa: KwaZulu-Natal region,,,,
1809,species,Mycobacterium ulcerans,1,42,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group; Mycobacterium ulcerans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,18,22,4.0,37,24,MEDIUM,45.80992101282153,1,CHEMBL612965,Mycobacterium ulcerans,ORGANISM,,,False,,,,,,,,,,,,,,,
1810,species,Mycobacterium vaccae,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium vaccae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,2,0,LOW,11.731386068380058,1,CHEMBL613224,Mycolicibacterium vaccae,ORGANISM,,,False,,,,,,,,,,,,,,,
1789,species,Mycobacterium xenopi,1,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium xenopi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,4,7.0,5,29,MEDIUM,28.51422942537662,1,CHEMBL612642,Mycobacterium xenopi,ORGANISM,,,False,,,,,,,,,,,,,,,
273136,species,Mycoplasma amphoriforme,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma amphoriforme,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
2094,species,Mycoplasma arginini,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Mycoplasmopsis; Mycoplasmopsis arginini,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,3,0,4.0,1,0,LOW,12.22978917214749,0,,,,,,False,,,,,,,,,,,,,,,
28903,species,Mycoplasma bovis,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Mycoplasmopsis; Mycoplasmopsis bovis,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,0,1,30.0,1,3,MEDIUM,13.799446214569745,1,CHEMBL3301407,Mycoplasmopsis bovis,ORGANISM,,,False,,,,,,,,,,,,,,,
2115,species,Mycoplasma fermentans,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Mycoplasmopsis; Mycoplasmopsis fermentans,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,2,7,0.0,9,0,LOW,22.145699244682177,1,CHEMBL6195312,Mycoplasma fermentans,ORGANISM,,,False,,,,,,,,,,,,,,,
2096,species,Mycoplasma gallisepticum,1,8,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Mycoplasmoidaceae; Mycoplasmoides; Mycoplasmoides gallisepticum,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,1,1,16.0,4,3,MEDIUM,19.951940875322443,1,CHEMBL612643,Mycoplasmoides gallisepticum,ORGANISM,,,False,,,,,,,,,,,,,,,
2097,species,Mycoplasma genitalium,1,26,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Mycoplasmoidaceae; Mycoplasmoides; Mycoplasmoides genitalium,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,4,7,1.0,42,16,MEDIUM,35.70158455841983,1,CHEMBL5465483,Mycoplasma genitalium,ORGANISM,,,False,,,,,,,,,,,,,,,
2099,species,Mycoplasma hyopneumoniae,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Mesomycoplasma; Mesomycoplasma hyopneumoniae,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,0,0,10.0,2,1,MEDIUM,10.981999169497236,1,CHEMBL5465479,Mesomycoplasma hyopneumoniae,ORGANISM,,,False,,,,,,,,,,,,,,,
2102,species,Mycoplasma mycoides,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma mycoides group; Mycoplasma mycoides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,7.0,1,0,LOW,7.624618986159398,0,,,,,,False,,,,,,,,,,,,,,,
171632,species,Mycoplasma ovis,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma ovis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,0,0,LOW,6.437751649736401,0,,,,,,False,,,,,,,,,,,,,,,
28227,species,Mycoplasma penetrans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Mycoplasmoidaceae; Malacoplasma; Malacoplasma penetrans,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,0,1,0.0,4,1,LOW,10.819778284410283,0,,,,,,False,,,,,,,,,,,,,,,
57372,species,Mycoplasma suis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma suis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,1,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
76832,species,Myroides odoratimimus,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides; Myroides odoratimimus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,2,10,MEDIUM,15.515575702298316,0,,,,,,False,,,,,,,,,,,,,,,
256,species,Myroides odoratus,2,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides; Myroides odoratus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,3,3,LOW,14.79165686307162,0,,,,,,False,,,,,,,,,,,,,,,
34,species,Myxococcus xanthus,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Myxococcota; Myxococcia; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus xanthus,no rank; cellular root; domain; kingdom; phylum; class; order; suborder; family; genus; species,Bacteria,0,0,1.0,2,0,LOW,6.87935580446044,0,,,,,,False,,,,,,,,,,,,,,,
908285,species,Necropsobacter rosorum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Necropsobacter; Necropsobacter rosorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
326522,species,Neisseria animaloris,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria animaloris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,2,LOW,5.493061443340549,0,,,,,,False,,,,,,,,,,,,,,,
267212,species,Neisseria bacilliformis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria bacilliformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,PDG000000129.11.metadata.tsv,7.0,ATCC BAA-1200 | 203_NMEN | 914_NLAC | DSM 23338 | AR-0943 | CCUG50611 | CCUG 30380,"ATCC BAA-1200,""SRS183264"" | 203_NMEN,""SRS746604"" | 914_NLAC,""SRS747332"" | ATCC:BAA-1200,""DSM 23338"",""SRS13953225"",""bacilliformis"" | AR-0943,""SRS6948733"" | CCUG50611,""CCUG50611-sc-2010-05-12-43176"",""ERS009608"" | 30380-sc-2010-05-07-9948,""CCUG 30380"",""ERS007068""",SAMN00253995 | SAMN03197396 | SAMN03198124 | SAMN15603180 | SAMN15454045 | SAMEA678414 | SAMEA678341,PRJNA53053 | PRJNA267549 | PRJNA647881 | PRJNA644200 | PRJEB2090,GCA_000194925.1 | GCA_001063965.1 | GCA_001067635.1 | GCA_014055025.1 | GCA_042537205.1 | GCA_042507785.2 | GCA_042507665.2,AFAY00000000.1 | JVQC00000000.1 | JUOC00000000.1 | DAXJJO000000000.1 | DAXHTP000000000.2 | DAXHTF000000000.2,missing | 2010 | 2020-04-20 | 2005 | 1992,not determined | USA: WA | USA: Texas | Sweden,Homo sapiens,,submandibular wound of a 53-year-old man,
493,species,Neisseria canis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,4,LOW,6.00388706710654,0,,,,,,False,,,,,,,,,,,,,,,
483,species,Neisseria cinerea,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria cinerea,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,3,2,LOW,8.030084094267563,0,,,,,,False,,PDG000000130.17.metadata.tsv,40.0,ATCC 14685 | C2012028592 | C2013024221 | C2014013859 | C2014019557 | NCTC10294 | FDAARGOS_871 | CCUG 2156 | CCUG 27178 A | CCUG 5746,"46969,""ATCC 14685"",""ATCC:14685"",""SRS010458"" | C2012028592,""SRS2818498"" | C2013024221,""SRS2818480"" | C2014013859,""SRS2818484"" | C2014019557,""SRS2818481"" | ERS1022038,""NCTC10294"",""NCTC:10294"",""d6a74250-a3d7-11e5-95f7-3c4a9275d6c6"" | DSM:4630,""FDAARGOS_871"",""SRS6867778"" | CCUG 2156,""CCUG:2156"",""Draft genome sequence of Neisseria cinerea type strain CCUG 2156T"",""SRS11148180"" | 27178-sc-2010-05-07-9914,""CCUG 27178 A"",""ERS007034"" | 5746-sc-2010-05-07-9910,""CCUG 5746"",""ERS007030""",SAMN00008837 | SAMN08299221 | SAMN08299227 | SAMN08299230 | SAMN08299231 | SAMEA3714889 | SAMN13450401 | SAMN23424481 | SAMEA678350 | SAMEA678346,PRJNA30469 | PRJNA428750 | PRJEB6403 | PRJNA231221 | PRJNA305687 | PRJEB2090,GCA_000173895.1 | GCA_003044675.1 | GCA_003044745.1 | GCA_003044825.1 | GCA_003044855.1 | GCA_900475315.1 | GCA_016028715.1 | GCA_021025975.1 | GCA_963394825.1 | GCA_963394885.1,ACDY00000000.2 | POXQ00000000.1 | POXW00000000.1 | POXZ00000000.1 | POYA00000000.1 | JAJNBX000000000.1 | CAUJPD000000000.1 | CAUJPF000000000.1,missing | 2012-01-01 | 2013-01-01 | 2014-01-01 | 1900/1962 | 1983 | 1977,not determined | USA: Minnesota | Germany | Sweden,Homo sapiens,not collected,"nasopharynx | nasopharynx, normal mucosa",not available: to be reported later
484,species,Neisseria flavescens,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria flavescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,1,LOW,9.010913347279288,0,,,,,,False,,,,,,,,,,,,,,,
485,species,Neisseria gonorrhoeae,1,135,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria gonorrhoeae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,42,11,7.0,251,155,HIGH,59.355404940304574,6,CHEMBL3565 | CHEMBL3970 | CHEMBL614430 | CHEMBL2311244 | CHEMBL2363077 | CHEMBL6066826,Dihydrofolate reductase | IgA-specific serine endopeptidase autotransporter | Neisseria gonorrhoeae | DNA gyrase | Topoisomerase IV | ATP-dependent Clp protease proteolytic subunit,SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX,,,False,dna_replication | folate_metabolism,PDG000000032.705.metadata.tsv,72675.0,FA 1090 | NCCP11945 | 1291 | 35/02 | DGI18 | FA6140 | PID18 | PID1 | PID24-1 | PID332,"AE004969,""ERS28491451"",""FA 1090"" | CP001050,""NCCP11945"" | 1291,""ABZF"" | 35/02,""ABZG"" | ABZH,""DGI18"" | ABZI,""FA6140"" | ABZL,""PID18"" | ABZM,""PID1"" | ABZN,""PID24-1"" | ABZO,""PID332""",SAMN02604088 | SAMN02603475 | SAMN02595238 | SAMN02595239 | SAMN02595240 | SAMN02595241 | SAMN02595243 | SAMN02595244 | SAMN02595245 | SAMN02595246,PRJNA23 | PRJNA29335 | PRJNA32783 | PRJNA32785 | PRJNA32789 | PRJNA32791 | PRJNA32797 | PRJNA32799 | PRJNA32801 | PRJNA32803,GCA_000006845.1 | GCA_000020105.1 | GCA_000156755.1 | GCA_000156775.1 | GCA_000156795.1 | GCA_000156815.1 | GCA_000156875.1 | GCA_000156895.1 | GCA_000156915.1 | GCA_000156935.1,ABZF00000000.1 | ABZG00000000.1 | ABZH00000000.1 | ABZI00000000.1 | ABZL00000000.1 | ABZM00000000.1 | ABZN00000000.1 | ABZO00000000.1,,,,,,
486,species,Neisseria lactamica,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria lactamica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,10,1,0.0,8,3,MEDIUM,24.043439880674303,0,,,,,,False,,PDG000000095.40.metadata.tsv,944.0,020-06 | Y92-1009 | NS19 | ATCC 23970 | 338.rep1_NLAC | NlUS07x1 | M17106 | NCTC10616 | NCTC10618 | M37142,"020-06,""ERS610272"",""GCA_000196295"" | ERS379528,""GCA_000180595"",""Y92-1009"" | AEPI,""NS19"" | ATCC 23970,""ATCC:23970"",""NLC"",""SRS1154015"" | 338.rep1_NLAC,""SRS746733"" | NlUS07-1,""NlUS07x1"" | M17106 | 219965f0-1dca-11e7-af90-3c4a9275d6c8,""ERS1669581"",""NCTC10616"",""NCTC:10616"" | ERS627819,""NCTC10618"",""NCTC10618-sc-2193118"",""NCTC:10618"" | M37142",SAMEA3138337 | SAMEA2272069 | SAMN02471876 | SAMN02870721 | SAMN03197528 | SAMN06827272 | SAMN09704838 | SAMEA103980413 | SAMEA3174296 | SAMN09704855,PRJNA13472 | PRJEA50739 | PRJNA60867 | PRJNA244570 | PRJNA267549 | PRJNA384053 | PRJNA428178 | PRJEB6403,GCA_000196295.1 | GCA_000180595.1 | GCA_000193795.2 | GCA_000741965.1 | GCA_001064605.1 | GCA_002318615.1 | GCA_003351565.1 | GCA_900454145.1 | GCA_900454095.1 | GCA_003492145.1,CACL00000000.1 | AEPI00000000.1 | JOVI00000000.1 | JVLA00000000.1 | NGBO00000000.1 | UGRO00000000.1 | UGRN00000000.1 | QQMV00000000.1,2007 | 1900/1965,"United Kingdom:Northern Ireland, Londonderry | USA: WA | USA: Denver | USA: Los Angeles, CA",Homo sapiens,urethritis | not collected,throat swab | urethral swab | not collected | Spinal fluid | not available: to be reported later,not available: to be reported later
487,species,Neisseria meningitidis,1,131,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria meningitidis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,27,25,19.0,225,198,HIGH,61.49055202295917,11,CHEMBL614431 | CHEMBL1795154 | CHEMBL3309061 | CHEMBL3988622 | CHEMBL4295919 | CHEMBL5498503 | CHEMBL5498507 | CHEMBL5500286 | CHEMBL5500291 | CHEMBL5500293 | CHEMBL5500296,"Neisseria meningitidis | Beta 1,3 N-acetylglucosaminyltransferase | Alpha 1,4 galactosyltransferase | Biliverdin-producing heme oxygenase | LgtC | Factor H binding protein | Polysaccharide conjugated to Tetanus toxoid | Neisseria adhesin A | Neisserial heparin binding antigen | Outer membrane vesicles | Oligosaccharide conjugated to Corynebacterium ciphtheriae CRM197",ORGANISM | SINGLE PROTEIN | OLIGOSACCHARIDE | SUBCELLULAR,,,False,membrane_function | virulence,PDG000000097.459.metadata.tsv,38311.0,MC58 | 53442 | alpha14 | ATCC 13091 | 8013 | WUE 2594 | G2136 | M01-240149 | alpha710 | M04-240196,"AE002098,""MC58"",""SRS1669092"" | 53442,""CP000381"" | ERS610224,""GCA_000083565"",""alpha14"" | ATCC 13091,""ATCC:13091"",""SRS119065"" | 8013,""ERS380143"",""GCA_000026965"" | ERS380094,""GCA_000253215"",""WUE 2594"" | CP002419,""G2136"",""SRS1669094"" | CP002421,""M01-240149"" | CP001561,""alpha710"" | CP002423,""M04-240196"",""SRS1669093""",SAMN02603997 | SAMN02603605 | SAMEA3138289 | SAMN00117532 | SAMEA2272745 | SAMEA2272690 | SAMN02604201 | SAMN02604198 | SAMN02603384 | SAMN02604199,PRJNA251 | PRJNA16393 | PRJNA39689 | PRJNA50525 | PRJEA34687 | PRJEA61527 | PRJNA61085 | PRJNA61069 | PRJNA36319 | PRJNA61073,GCA_000008805.1 | GCA_000014105.1 | GCA_000083565.1 | GCA_000146655.1 | GCA_000026965.1 | GCA_000253215.1 | GCA_000191425.1 | GCA_000191465.1 | GCA_000152165.1 | GCA_000191505.1,AEEF00000000.1,missing,not determined,Homo sapiens,,,A
488,species,Neisseria mucosa,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria mucosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,2,1.0,2,10,MEDIUM,15.34567666550292,1,CHEMBL6195313,Neisseria mucosa,ORGANISM,,,False,,,,,,,,,,,,,,,
1107316,species,Neisseria oralis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria oralis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,0,,,,,,False,,PDG000000132.13.metadata.tsv,10.0,CCUG 26878 | CM005 | 1 | EXNM717,"26878-sc-2010-05-07-9904,""CCUG 26878"",""ERS007024"" | CM005,""SRS9535815"",""UW-CM005"" | 1,""MO00032/1"",""MO05"",""SRS8293855"" | EXNM717,""N_Oralis_EXNM717""",SAMEA678510 | SAMN20296563 | SAMN18012337 | SAMN44701579,PRJEB2090 | PRJNA747821 | PRJNA703317 | PRJNA1185304,GCA_963394915.1 | GCA_042557485.1 | GCA_042536885.1 | GCA_045062685.1,CAUJQB000000000.1 | DAXJOW000000000.1 | DAXJIR000000000.1 | JBJGEB000000000.1,missing | 2020 | 2019-03-04 | 2019,not collected | USA | Belgium: Antwerp | Australia,Homo sapiens,Nonpathogenic,throat | pharyngeal | oropharyngeal swab,
28091,species,Neisseria weaveri,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria weaveri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,0,,,,,,False,,PDG000000135.10.metadata.tsv,12.0,LMG 5135 | ATCC 51223 | NCTC13585 | C2009035459 | C2010015191 | C2009028987 | C2013013825 | NCTC12742 | CCUG 4007 T | AR-0959,"AFWQ,""LMG 5135"",""LMG:5135"" | AFWR,""ATCC 51223"",""ATCC:51223"" | ERS627823,""NCTC13585"",""NCTC13585-sc-2193122"" | C2009035459,""SRS2818954"" | C2010015191,""SRS2818509"" | C2009028987,""SRS2818513"" | C2013013825,""SRS2818506"" | 68259104-a503-11e7-854e-3c4a9275d6c8,""ERS1963407"",""NCTC12742"",""NCTC:12742"" | 4007-sc-2010-05-07-9930,""CCUG 4007 T"",""ERS007050"" | AR-0959,""SRS6948727""",SAMN02470907 | SAMN02470917 | SAMEA3174300 | SAMN08299210 | SAMN08299213 | SAMN08299209 | SAMN08299225 | SAMEA104338429 | SAMEA678207 | SAMN15454060,PRJNA68581 | PRJNA68583 | PRJEB6403 | PRJNA428750 | PRJEB2090 | PRJNA644200,GCA_000224255.2 | GCA_000224275.2 | GCA_900086555.1 | GCA_003044545.1 | GCA_003044885.1 | GCA_003044905.1 | GCA_003044995.1 | GCA_900638685.1 | GCA_963396185.1 | GCA_042537225.1,AFWQ00000000.1 | AFWR00000000.1 | POXF00000000.1 | POXI00000000.1 | POXE00000000.1 | POXU00000000.1 | CAUJRG000000000.1 | DAXJJM000000000.1,2009-01-01 | 2010-01-01 | 2013-01-01 | 1974 | 2020-04-20,USA: Minnesota | Sweden: Gothenberg | Sweden,Homo sapiens,not collected,wound,not available: to be reported later
326523,species,Neisseria zoodegmatis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria zoodegmatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
89586,species,Neoehrlichia mikurensis,1,14,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Candidatus Neoehrlichia; Neoehrlichia mikurensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,14,15,1.0,15,7,MEDIUM,36.47864648512681,0,,,,,,False,,,,,,,,,,,,,,,
732241,species,Neomicrococcus lactis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Neomicrococcus; Neomicrococcus lactis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
950,species,Neorickettsia risticii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Neorickettsia; Neorickettsia risticii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,2.0,1,2,LOW,8.84101431048389,0,,,,,,False,,,,,,,,,,,,,,,
1917880,species,Nissabacter archeti,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Nissabacter; Nissabacter archeti,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
120957,species,Nocardia abscessus,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia abscessus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,5,LOW,9.65194452670022,1,CHEMBL6195318,Nocardia abscessus,ORGANISM,,,False,,,,,,,,,,,,,,,
404578,species,Nocardia amamiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia amamiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,2,LOW,5.493061443340549,0,,,,,,False,,,,,,,,,,,,,,,
756689,species,Nocardia amikacinitolerans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia amikacinitolerans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
228600,species,Nocardia araoensis,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia araoensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,0,,,,,,False,,,,,,,,,,,,,,,
228602,species,Nocardia arthritidis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia arthritidis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,3,LOW,9.704060527839234,0,,,,,,False,,,,,,,,,,,,,,,
209252,species,Nocardia asiatica,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia asiatica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,12,MEDIUM,10.88271552418088,0,,,,,,False,,,,,,,,,,,,,,,
1824,species,Nocardia asteroides,1,15,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia asteroides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,3,3.0,8,84,MEDIUM,31.149144258115747,1,CHEMBL613231,Nocardia asteroides,ORGANISM,,,False,,,,,,,,,,,,,,,
95162,species,Nocardia beijingensis,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia beijingensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,10,MEDIUM,12.301382825334498,1,CHEMBL6195319,Nocardia beijingensis,ORGANISM,,,False,,,,,,,,,,,,,,,
37326,species,Nocardia brasiliensis,1,9,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia brasiliensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,1.0,7,60,MEDIUM,24.411569125108617,1,CHEMBL612976,Nocardia brasiliensis,ORGANISM,,,False,,,,,,,,,,,,,,,
1823,species,Nocardia caviae,2,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia otitidiscaviarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,2,LOW,5.950642552587727,1,CHEMBL613233,Nocardia otitidiscaviarum,ORGANISM,,,False,,,,,,,,,,,,,,,
85688,species,Nocardia cerradoensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia cerradoensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,0,,,,,,False,,,,,,,,,,,,,,,
257281,species,Nocardia concava,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia concava,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
53428,species,Nocardia crassostreae,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia crassostreae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
135487,species,Nocardia cyriacigeorgica,2,15,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia cyriacigeorgica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,3,1.0,2,47,MEDIUM,22.693080494949257,1,CHEMBL4296583,Nocardia cyriacigeorgica,ORGANISM,,,False,,,,,,,,,,,,,,,
37329,species,Nocardia farcinica,1,18,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia farcinica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,2,3.0,7,125,MEDIUM,29.61968137031411,1,CHEMBL613232,Nocardia farcinica,ORGANISM,,,False,,,,,,,,,,,,,,,
352869,species,Nocardia gamkensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia gamkensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
2755382,species,Nocardia huaxiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia huaxiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
341199,species,Nocardia kroppenstedtii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia kroppenstedtii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
236511,species,Nocardia neocaledoniensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia neocaledoniensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,1,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
626084,species,Nocardia niwae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia niwae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
37330,species,Nocardia nova,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia nova,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,2,2.0,2,24,MEDIUM,18.599447866221738,1,CHEMBL612977,Nocardia nova,ORGANISM,,,False,,,,,,,,,,,,,,,
114259,species,Nocardia paucivorans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia paucivorans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,12,MEDIUM,2.5649493574615367,0,,,,,,False,,,,,,,,,,,,,,,
228601,species,Nocardia pneumoniae,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia pneumoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,3,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
45979,species,Nocardia pseudobrasiliensis,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia pseudobrasiliensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,1,LOW,5.545177444479562,1,CHEMBL612978,Nocardia pseudobrasiliensis,ORGANISM,,,False,,,,,,,,,,,,,,,
259390,species,Nocardia takedensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia takedensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
455432,species,Nocardia terpenica,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia terpenica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,6,LOW,7.438971592395863,0,,,,,,False,,,,,,,,,,,,,,,
37333,species,Nocardia transvalensis,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia transvalensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,1,CHEMBL613234,Nocardia transvalensis,ORGANISM,,,False,,,,,,,,,,,,,,,
132249,species,Nocardia veterana,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia veterana,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,8,LOW,2.19722457733622,1,CHEMBL6195320,Nocardia veterana,ORGANISM,,,False,,,,,,,,,,,,,,,
96468,species,Nocardia vinacea,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia vinacea,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
480035,species,Nocardia wallacei,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia; Nocardia wallacei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,6,LOW,5.41164605185504,0,,,,,,False,,,,,,,,,,,,,,,
2014,species,Nocardiopsis dassonvillei,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Streptosporangiales; Nocardiopsidaceae; Nocardiopsis; Nocardiopsis dassonvillei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,0,LOW,8.317766166719343,0,,,,,,False,,,,,,,,,,,,,,,
529,species,Ochrobactrum anthropi,2,27,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella anthropi,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species,Bacteria,10,2,0.0,21,28,MEDIUM,31.709926053975867,1,CHEMBL5058636,Brucella anthropi,ORGANISM,,,False,,,,,,,,,,,,,,,
94625,species,Ochrobactrum intermedium,2,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella intermedia,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species,Bacteria,1,0,1.0,7,4,LOW,16.16552870419295,0,,,,,,False,,,,,,,,,,,,,,,
94626,species,Ochrobactrum tritici,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group; Brucella; Brucella tritici,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
28118,species,Odoribacter splanchnicus,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Odoribacteraceae; Odoribacter; Odoribacter splanchnicus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,5,LOW,6.186208623900495,1,CHEMBL6195323,Odoribacter splanchnicus,ORGANISM,,,False,,,,,,,,,,,,,,,
1713,species,Oerskovia turbata,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Cellulomonadaceae; Oerskovia; Oerskovia turbata,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
90244,species,Oligella ureolytica,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella; Oligella ureolytica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,2,6,LOW,8.825265953515753,0,,,,,,False,,,,,,,,,,,,,,,
784,species,Orientia tsutsugamushi,1,24,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia; Orientia tsutsugamushi,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species,Bacteria,14,23,6.0,15,119,MEDIUM,42.90861794754425,1,CHEMBL6195325,Orientia tsutsugamushi,ORGANISM,,,False,,,,,,,,,,,,,,,
28251,species,Ornithobacterium rhinotracheale,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Ornithobacterium; Ornithobacterium rhinotracheale,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,0,6.0,0,5,LOW,5.683579767338681,0,,,,,,False,,,,,,,,,,,,,,,
1263547,species,Oscillibacter ruminantium,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Oscillibacter; Oscillibacter ruminantium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
412861,species,Paenibacillus humicus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Paenibacillaceae; Paenibacillus; Paenibacillus humicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
1464,species,Paenibacillus larvae,2,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Paenibacillaceae; Paenibacillus; Paenibacillus larvae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,3.0,1,0,LOW,6.238324625039508,1,CHEMBL4630681,Paenibacillus larvae,ORGANISM,,,False,,,,,,,,,,,,,,,
217090,species,Paenibacillus pasadenensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Paenibacillaceae; Paenibacillus; Paenibacillus pasadenensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
49283,species,Paenibacillus thiaminolyticus,1,5,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Paenibacillaceae; Paenibacillus; Paenibacillus thiaminolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,0.0,2,3,LOW,15.396548995876676,0,,,,,,False,,,,,,,,,,,,,,,
1505,species,Paeniclostridium sordellii,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Paraclostridium; Paraclostridium sordellii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,2,3,LOW,11.731386068380058,1,CHEMBL613072,Paeniclostridium sordellii,ORGANISM,,,False,,,,,,,,,,,,,,,
93218,species,Pandoraea apista,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea; Pandoraea apista,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,3,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
93222,species,Pandoraea sputorum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea; Pandoraea sputorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,3,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
549,species,Pantoea agglomerans,3,17,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea agglomerans group; Pantoea agglomerans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,7,5,4.0,16,27,MEDIUM,34.41019162972799,1,CHEMBL613239,Pantoea agglomerans,ORGANISM,,,False,,,,,,,,,,,,,,,
574096,species,Pantoea allii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea allii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
553,species,Pantoea ananatis,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea ananatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,4,3,LOW,17.05810290944979,1,CHEMBL2285356,Lycopene beta-cyclase,SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
470931,species,Pantoea anthophila,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea anthophila,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,0,LOW,4.394449154672439,0,,,,,,False,,,,,,,,,,,,,,,
472705,species,Pantoea conspicua,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea conspicua,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
59814,species,Pantoea dispersa,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea dispersa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,0.0,3,5,LOW,15.890269151739728,1,CHEMBL2367319,Pantoea dispersa,ORGANISM,,,False,,,,,,,,,,,,,,,
470933,species,Pantoea eucalypti,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea eucalypti,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1964541,species,Pantoea latae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea latae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
2364647,species,Pantoea piersonii,2,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea piersonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,2,1,LOW,10.580657778572933,0,,,,,,False,,,,,,,,,,,,,,,
472695,species,Pantoea septica,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea septica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,2,3,LOW,9.651944526700222,0,,,,,,False,,,,,,,,,,,,,,,
823,species,Parabacteroides distasonis,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides distasonis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,0,3,LOW,7.6246189861593985,1,CHEMBL614413,Parabacteroides distasonis,ORGANISM,,,False,,,,,,,,,,,,,,,
328812,species,Parabacteroides goldsteinii,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides goldsteinii,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL6195327,Parabacteroides goldsteinii,ORGANISM,,,False,,,,,,,,,,,,,,,
134537,species,Paraburkholderia fungorum,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia; Paraburkholderia fungorum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
83552,species,Parachlamydia acanthamoebae,1,11,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Parachlamydiales; Parachlamydiaceae; Parachlamydia; Parachlamydia acanthamoebae,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,14,0,MEDIUM,19.08542844999061,1,CHEMBL6195328,Parachlamydia acanthamoebae,ORGANISM,,,False,,,,,,,,,,,,,,,
1490,species,Paraclostridium bifermentans,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Paraclostridium; Paraclostridium bifermentans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,3,1,LOW,12.476649250079015,1,CHEMBL614962,Paraclostridium bifermentans,ORGANISM,,,False,,,,,,,,,,,,,,,
266,species,Paracoccus denitrificans,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus; Paracoccus denitrificans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,6,0,LOW,12.502139467516349,1,CHEMBL612495,Paracoccus denitrificans,ORGANISM,,,False,,,,,,,,,,,,,,,
147645,species,Paracoccus yeei,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus; Paracoccus yeei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,3,1,LOW,10.39720770839918,0,,,,,,False,,,,,,,,,,,,,,,
33033,species,Parvimonas micra,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Parvimonas; Parvimonas micra,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,1,76,MEDIUM,12.661571588573027,1,CHEMBL612380,Parvimonas micra,ORGANISM,,,False,,,,,,,,,,,,,,,
752,species,Pasteurella bettyae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella; Pasteurella bettyae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
753,species,Pasteurella canis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella; Pasteurella canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,0,1.0,1,17,MEDIUM,15.526042618037035,0,,,,,,False,,,,,,,,,,,,,,,
754,species,Pasteurella dagmatis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella; Pasteurella dagmatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,3,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
755,species,Pasteurella gallinarum,2,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Avibacterium; Avibacterium gallinarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
747,species,Pasteurella multocida,1,46,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella; Pasteurella multocida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,50,15,42.0,17,174,HIGH,51.18411369240811,1,CHEMBL614409,Pasteurella multocida,ORGANISM,,,False,,PDG000000102.173.metadata.tsv,3924.0,Pm70 | 36950 | HN06 | 3480 | P52VAC | X73 | P1059 | 1500E | P1933 | RIIF,"AE004439,""Pm70"" | 36950,""CP003022"" | CP003313,""HN06"" | 3480,""CP001409"" | ALBZ,""P52VAC"" | AMBP,""ATCC:11039"",""X73"" | AMBQ,""P1059"" | 1500E,""AQTL"" | ARNY,""P1933"" | ARNZ,""RIIF""",SAMN02604085 | SAMN02603284 | SAMN02603325 | SAMN02603505 | SAMN02469638 | SAMN02470584 | SAMN02470591 | SAMN02470554 | SAMN02470559 | SAMN02470562,PRJNA39 | PRJNA70829 | PRJNA80883 | PRJNA32177 | PRJNA72159 | PRJNA155371 | PRJNA152827 | PRJNA191135 | PRJNA191138 | PRJNA191139,GCA_000006825.1 | GCA_000234745.1 | GCA_000255915.1 | GCA_000259545.1 | GCA_000291605.1 | GCA_000298655.1 | GCA_000298675.1 | GCA_000409915.1 | GCA_000412015.1 | GCA_000412105.1,ALBZ00000000.1 | AMBP00000000.1 | AMBQ00000000.1 | AQTL00000000.1 | ARNY00000000.1 | ARNZ00000000.1,2011-01 | 1962 | 2000 | 2004 | 1999,"India: Vaccine Institute, Gandhinagar, Gujarat | USA | United Kingdom: Scotland | United Kingdom",pig | Bubalus bubalis | turkey | bovine | ovine,,"lung of animal with pneumonia | blood of buffalo calf after artificial infection with haemorrhagic septicemi causing organism, Pasteurella multocida | liver of turkey died of fowl cholera disease | nasal sample | vagina",
758,species,Pasteurella pneumotropica,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Rodentibacter; Rodentibacter pneumotropicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,2.0,0,3,LOW,11.208137924615508,0,,,,,,False,,,,,,,,,,,,,,,
761,species,Pasteurella testudinis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella; Pasteurella testudinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
47735,species,Pasteurella trehalosi,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia; Bibersteinia trehalosi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
723,species,Pasteurella ureae,2,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus; Actinobacillus ureae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,3,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
1254,species,Pediococcus acidilactici,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus acidilactici group; Pediococcus acidilactici,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,1,0.0,2,2,LOW,8.671115273688494,0,,,,,,False,,,,,,,,,,,,,,,
51663,species,Pediococcus damnosus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus damnosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
1255,species,Pediococcus pentosaceus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus pentosaceus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,3,3,LOW,9.704060527839234,0,,,,,,False,,,,,,,,,,,,,,,
1258,species,Peptococcus asaccharolyticus,2,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Peptoniphilus; Peptoniphilus asaccharolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL614419,Peptoniphilus asaccharolyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
33030,species,Peptoniphilus indolicus,2,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Peptoniphilus; Peptoniphilus indolicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,3,LOW,1.3862943611198906,1,CHEMBL6195334,Peptoniphilus indolicus,ORGANISM,,,False,,,,,,,,,,,,,,,
1261,species,Peptostreptococcus anaerobius,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Peptostreptococcus; Peptostreptococcus anaerobius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,2.0,0,6,LOW,10.617025422743808,1,CHEMBL614420,Peptostreptococcus anaerobius,ORGANISM,,,False,,,,,,,,,,,,,,,
54006,species,Peptostreptococcus ivorii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae; Aedoeadaptatus; Aedoeadaptatus ivorii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
821,species,Phocaeicola vulgatus,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola vulgatus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,1,CHEMBL612287,Phocaeicola vulgatus,ORGANISM,,,False,,,,,,,,,,,,,,,
38293,species,Photobacterium damselae,2,19,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium damselae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,13,3,MEDIUM,18.97603016386862,0,,,,,,False,,PDG000000065.127.metadata.tsv,280.0,CIP 102761 | DI21 | BT-6 | LD-07 | RM-71 | A-162 | KC-Na-1 | 91-197 | 940804-1/2 | 206317-1,"ADBS,""CIP 102761"" | AKYG,""DI21"" | BT-6,""CFSAN046818"",""P85"",""SRS1307690"" | LD-07 | RM-71 | A-162,""P. damselae subsp. damselae strain A-162"" | KC-Na-1,""Photobacterium damselae subsp. damselae KC-Na-1"" | 91-197,""PDP-USA"" | 940804-1/2,""DK3"" | 206317-1,""DK29""",SAMN02393816 | SAMN02471934 | SAMN04507567 | SAMN04531897 | SAMN04531896 | SAMN05178634 | SAMN06909323 | SAMD00078763 | SAMN08536174 | SAMN08536176,PRJNA40485 | PRJNA168653 | PRJNA243331 | PRJNA314300 | PRJNA314299 | PRJNA323423 | PRJNA385756 | PRJDB5709 | PRJNA434090 | PRJNA434092,GCA_000176795.1 | GCA_000300355.4 | GCA_001676145.1 | GCA_001707815.1 | GCA_001708035.2 | GCA_001729115.1 | GCA_002142615.1 | GCA_002356235.1 | GCA_003004505.1 | GCA_003004605.1,ADBS00000000.1 | AKYG00000000.1 | LZFH00000000.1 | LYBU00000000.1 | LZFN00000000.1 | PVXG00000000.1 | PVXI00000000.1,1990 | 2008 | 1991 | 1988 | 2017-01 | 1994 | 2009,Spain | USA | Spain:Huelva | Spain: Galicia | Belgium | South Korea: South sea | Denmark,gilthead seabream | Sparus aurata | Anguilla anguilla | Neophocaena asiaeorientalis | Morone chrysops x Morone saxatilis | rainbow trout (Oncorhynchus mykiss),,liver of fish with pasteurellosis | aquarium sea water | Fish farm | Turbot fish farm | eel | anal swab | kidney of farmed rainbow trout,
291112,species,Photorhabdus asymbiotica,1,10,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus; Photorhabdus asymbiotica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,2,1.0,18,0,MEDIUM,27.18796671917768,0,,,,,,False,,,,,,,,,,,,,,,
2218628,species,Photorhabdus laumondii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus; Photorhabdus laumondii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
29488,species,Photorhabdus luminescens,1,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus; Photorhabdus luminescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,15,0,MEDIUM,20.79441541679836,2,CHEMBL2366785 | CHEMBL5169234,Photorhabdus luminescens | Lectin A,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1238,species,Piscirickettsia salmonis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Piscirickettsia; Piscirickettsia salmonis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,3,0,LOW,9.128696382935672,0,,,,,,False,,,,,,,,,,,,,,,
703,species,Plesiomonas shigelloides,1,11,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Plesiomonas; Plesiomonas shigelloides,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,4,2.0,10,19,MEDIUM,29.794387548405613,1,CHEMBL614405,Plesiomonas shigelloides,ORGANISM,,,False,,,,,,,,,,,,,,,
61647,species,Pluralibacter gergoviae,2,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pluralibacter; Pluralibacter gergoviae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,1,CHEMBL615042,Pluralibacter gergoviae,ORGANISM,,,False,,PDG000000092.84.metadata.tsv,97.0,FB2 | 40874 | JB83E35 | JS81F13 | DS82E24 | SS84A28 | JP84E9 | SN86A38 | DL84A27 | SF84F43,"FB2 | 40874,""GCID_ENTE_00105"",""SRS856861"" | JB83E35,""Pluralibacter gergoviae JB83E35"" | JS81F13,""Pluralibacter gergoviae JS81F13"" | DS82E24,""Pluralibacter gergoviae DS82E24"" | Pluralibacter gergoviae SS84A28,""SS84A28"" | JP84E9,""Pluralibacter gergoviae JP84E9"" | Pluralibacter gergoviae SN86A38,""SN86A38"" | DL84A27,""Pluralibacter gergoviae DL84A27"" | Pluralibacter gergoviae SF84F43,""SF84F43""",SAMN03031196 | SAMN03283660 | SAMN03737788 | SAMN03737704 | SAMN03737705 | SAMN03737802 | SAMN03737823 | SAMN03737937 | SAMN03737789 | SAMN03737876,PRJNA260760 | PRJNA259658 | PRJNA285085,GCA_000757785.1 | GCA_000957245.1 | GCA_001038215.1 | GCA_001038225.1 | GCA_001038235.1 | GCA_001038285.1 | GCA_001038295.1 | GCA_001038345.1 | GCA_001038375.1 | GCA_001038385.1,JZYL00000000.1 | LDZH00000000.1 | LDZF00000000.1 | LDZG00000000.1 | LDZJ00000000.1 | LDZK00000000.1 | LDZN00000000.1 | LDZI00000000.1 | LDZL00000000.1,2013-04 | 2013 | 2005-07-22 | 2000-05-16 | 2002-03-08 | 2006-10-23 | 2008-09-05 | 2013-03-03 | 2006-09-15 | 2009-02-12,"Malaysia | USA: NJ | USA: CA, San Francisco",Homo sapiens,UTI s/p transpubic urethroplasty 2 days | respiratory disease | COPD | keratoacanthoma | UTI s/p urostomy | VAP c/b bacteremia | Bile duct stricture | sepsis s/p liver transplant x2,Fish ball | urine culture | bronchoalveolar lavage | endotracheal aspirate | right shin wound culture | blood culture | peribile duct tissue,
837,species,Porphyromonas gingivalis,1,43,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas gingivalis,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,12,37,13.0,38,54,MEDIUM,48.77581198413652,5,CHEMBL614414 | CHEMBL5664 | CHEMBL1909489 | CHEMBL3308933 | CHEMBL4295559,Porphyromonas gingivalis | Lys-gingipain HG66 | Collagenase | Arg-gingipain-1 proteinase | Dipeptidyl peptidase IV,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
867595,species,Porphyromonas pogonae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas pogonae,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
28125,species,Prevotella bivia,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella bivia,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,13,MEDIUM,10.499242387087424,1,CHEMBL612321,Prevotella bivia,ORGANISM,,,False,,,,,,,,,,,,,,,
28131,species,Prevotella intermedia,1,6,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella intermedia,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,2,3,2.0,1,23,MEDIUM,17.394346548516005,1,CHEMBL613261,Prevotella intermedia,ORGANISM,,,False,,,,,,,,,,,,,,,
1747,species,Propionibacterium acnes,2,49,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Cutibacterium; Cutibacterium acnes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,9,17,14.0,11,155,MEDIUM,40.77194530405863,2,CHEMBL612639 | CHEMBL2364151,Cutibacterium acnes | Thioredoxin reductase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
33010,species,Propionibacterium avidum,2,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Cutibacterium; Cutibacterium avidum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,0,3,LOW,3.58351893845611,1,CHEMBL6195359,Propionibacterium avidum,ORGANISM,,,False,,,,,,,,,,,,,,,
1744,species,Propionibacterium freudenreichii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionibacterium; Propionibacterium freudenreichii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,1,0,LOW,10.39720770839918,0,,,,,,False,,,,,,,,,,,,,,,
33012,species,Propionimicrobium lymphophilum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionimicrobium; Propionimicrobium lymphophilum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,1,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
584,species,Proteus mirabilis,1,89,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Proteus; Proteus mirabilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,22,8,5.0,73,109,HIGH,48.93797536599463,2,CHEMBL614444 | CHEMBL5744,Proteus mirabilis | Beta-lactamase,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
102862,species,Proteus penneri,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Proteus; Proteus penneri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,3,3,LOW,12.476649250079015,1,CHEMBL6195364,Proteus penneri,ORGANISM,,,False,,,,,,,,,,,,,,,
585,species,Proteus vulgaris,1,20,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Proteus; Proteus vulgaris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,3,1.0,32,9,MEDIUM,33.64806651152535,2,CHEMBL4782 | CHEMBL614450,Beta-lactamase | Proteus vulgaris,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
126385,species,Providencia alcalifaciens,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia; Providencia alcalifaciens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,2,1.0,6,2,LOW,15.510294261068896,1,CHEMBL612460,Providencia alcalifaciens,ORGANISM,,,False,,,,,,,,,,,,,,,
2027290,species,Providencia huaxiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia; Providencia huaxiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
587,species,Providencia rettgeri,2,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia; Providencia rettgeri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,3,5.0,4,16,MEDIUM,24.16798237252206,1,CHEMBL612537,Providencia rettgeri,ORGANISM,,,False,,,,,,,,,,,,,,,
588,species,Providencia stuartii,1,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia; Providencia stuartii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,2.0,7,12,MEDIUM,23.67657483461317,3,CHEMBL614445 | CHEMBL5895 | CHEMBL5713,Providencia stuartii | Beta-lactamase | Type II restriction enzyme PstI,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
314281,species,Pseudoalteromonas tunicata,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; Pseudoalteromonas tunicata,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
156979,species,Pseudoglutamicibacter cumminsii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Pseudoglutamicibacter; Pseudoglutamicibacter cumminsii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,0,,,,,,False,,,,,,,,,,,,,,,
287,species,Pseudomonas aeruginosa,2,1945,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,258,137,221.0,1353,1059,HIGH,90.83454452048154,41,CHEMBL348 | CHEMBL5539 | CHEMBL5540 | CHEMBL5225 | CHEMBL5482 | CHEMBL5798 | CHEMBL6146 | CHEMBL1075209 | CHEMBL1075210 | CHEMBL1075211 | CHEMBL1075213 | CHEMBL1250341 | CHEMBL1255122 | CHEMBL1255123 | CHEMBL1287600 | CHEMBL1287601 | CHEMBL1287605 | CHEMBL1293244 | CHEMBL1293246 | CHEMBL1641350 | CHEMBL1744489 | CHEMBL2163170 | CHEMBL2363020 | CHEMBL2364022 | CHEMBL3390827 | CHEMBL3390828 | CHEMBL3559673 | CHEMBL3562178 | CHEMBL3832957 | CHEMBL3885668 | CHEMBL3885670 | CHEMBL3988501 | CHEMBL4105738 | CHEMBL4295623 | CHEMBL4295635 | CHEMBL4632346 | CHEMBL4662962 | CHEMBL4845621 | CHEMBL5169224 | CHEMBL5169241 | CHEMBL6196142,Pseudomonas aeruginosa | Penicillin-binding protein 2 | Penicillin-binding protein 1B | Penicillin-binding protein 3 | Beta-lactamase OXA-10 | Beta-lactamase VIM-2 | Beta-lactamase VIM-4 | Heme oxygenase | Metallo-beta-lactamase type 2 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | PhzR | Beta-lactamase GES-13 | Metallo-beta-lactamase VIM-11 | Metallo-beta-lactamase VIM-2 | Class B carbapenemase VIM-13 | Beta-lactamase VIM-1 | Metallo-b-lactamase | Beta-lactamase | Beta Lactamase | Beta-lactamase PSE-4 | UDP-3-O-acyl-N-acetylglucosamine deacetylase | Penicillin-binding protein | 70S ribosome | Topoisomerase IV | DNA gyrase | 2-heptyl-4(1H)-quinolone synthase PqsD | Beta-lactamase IMP-1 | Metallo beta-lactamase | Beta-lactamase bla(BEL1) | Low calcium response locus protein V | GIM-1 protein | Exoenzyme S | Metallo-beta-lactamase AIM-1 | Alginate polysaccharide | Psl | c-di-GMP G-quadruplex | Protease LasA | Ribosomal RNA small subunit methyltransferase A | Phenazine biosynthesis protein PhzB 2,ORGANISM | SINGLE PROTEIN | PROTEIN FAMILY | PROTEIN NUCLEIC-ACID COMPLEX | PROTEIN COMPLEX | SMALL MOLECULE | OLIGOSACCHARIDE | NUCLEIC-ACID,,,False,beta_lactam_resistance | cell_wall_biosynthesis | dna_replication | protein_synthesis,PDG000000036.1800.metadata.tsv,65847.0,PAO1 | UCBPP-PA14 | PAb1 | PACS2 | 39016 | 2_1_26 | M18 | DK2 | NCGM2.S1 | MPAO1/P1,"AE004091,""PAO1"" | CP000438,""UCBPP-PA14"" | PAb1,""Pseudomonas aeruginosa PAb1 genomic sample"",""SRS000517"" | AAQW,""PACS2"" | 39016,""AEEX"" | 2_1_26,""40037"",""SRS4768298"" | CP002496,""M18"" | CP003149,""DK2"" | AP012280,""NCGM2.S1"" | AHKM,""MPAO1/P1""",SAMN02603714 | SAMN02603591 | SAMN00000299 | SAMN02471994 | SAMN02471834 | SAMN02463803 | SAMN02603849 | SAMN02603895 | SAMD00061003 | SAMN02471696,PRJNA331 | PRJNA386 | PRJNA28809 | PRJNA16851 | PRJNA49667 | PRJNA40037 | PRJNA61423 | PRJNA73815 | PRJDA73453 | PRJNA80839,GCA_000006765.1 | GCA_000014625.1 | GCA_000172395.1 | GCA_000168335.1 | GCA_000148745.1 | GCA_000233495.1 | GCA_000226155.1 | GCA_000271365.1 | GCA_000284555.1 | GCA_000247435.2,ABKZ00000000.1 | AAQW00000000.1 | AEEX00000000.1 | ACWU00000000.1 | AHKM00000000.1,missing,not provided,Homo sapiens,,clininal isolate from frostbite patient | cornea of a patient with ulcerative keratitis | gastrointestinal tract,
2219225,species,Pseudomonas asiatica,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas asiatica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,2,1,LOW,6.186208623900495,0,,,,,,False,,,,,,,,,,,,,,,
587753,species,Pseudomonas chlororaphis,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas chlororaphis group; Pseudomonas chlororaphis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,2,0,LOW,8.26565016558033,0,,,,,,False,,,,,,,,,,,,,,,
53408,species,Pseudomonas citronellolis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas citronellolis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,3,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
43306,species,Pseudomonas denitrificans,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Halopseudomonas; Halopseudomonas pertucinogena group; Pseudomonas denitrificans (nom. rej.),no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,0.0,1,1,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
312306,species,Pseudomonas entomophila,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas entomophila,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,3,0,LOW,9.010913347279288,0,,,,,,False,,,,,,,,,,,,,,,
294,species,Pseudomonas fluorescens,1,34,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,7,4,5.0,38,9,MEDIUM,37.34999216612003,4,CHEMBL3675 | CHEMBL612500 | CHEMBL4105840 | CHEMBL4105931,p-hydroxybenzoate hydroxylase | Pseudomonas fluorescens | Kynurenine 3-monooxygenase | Beta-lactamase,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
47880,species,Pseudomonas fulva,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas fulva,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,2.0,3,3,LOW,13.287579466295345,0,,,,,,False,,,,,,,,,,,,,,,
1288410,species,Pseudomonas guariconensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas guariconensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,0,,,,,,False,,,,,,,,,,,,,,,
2666183,species,Pseudomonas juntendi,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas juntendi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
47886,species,Pseudomonas luteola,2,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas luteola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,5,7,LOW,13.23546346515633,2,CHEMBL3308938 | CHEMBL6195371,Beta-lactamase | Pseudomonas luteola,SINGLE PROTEIN | ORGANISM,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
300,species,Pseudomonas mendocina,1,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Ectopseudomonas; Ectopseudomonas mendocina,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,0,0.0,6,7,LOW,19.592632883177654,0,,,,,,False,,,,,,,,,,,,,,,
76759,species,Pseudomonas monteilii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas monteilii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,0,0.0,5,5,LOW,15.145005970040769,0,,,,,,False,,,,,,,,,,,,,,,
78327,species,Pseudomonas mosselii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas mosselii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
47885,species,Pseudomonas oryzihabitans,2,10,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas oryzihabitans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,7,1,0.0,4,9,LOW,20.746982363563728,0,,,,,,False,,,,,,,,,,,,,,,
319939,species,Pseudomonas otitidis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Metapseudomonas; Metapseudomonas otitidis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,4,LOW,1.6094379124341005,0,,,,,,False,,,,,,,,,,,,,,,
70775,species,Pseudomonas plecoglossicida,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas plecoglossicida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,0,0.0,1,1,LOW,8.55333223803211,0,,,,,,False,,,,,,,,,,,,,,,
380021,species,Pseudomonas protegens,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas chlororaphis group; Pseudomonas protegens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,5,0,LOW,11.731386068380056,0,,,,,,False,,,,,,,,,,,,,,,
303,species,Pseudomonas putida,1,31,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group; Pseudomonas putida,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,14,1,1.0,35,21,MEDIUM,35.30657385284742,5,CHEMBL612501 | CHEMBL5594 | CHEMBL4739 | CHEMBL1293291 | CHEMBL2321641,Pseudomonas putida | Camphor 5-monooxygenase | Mandelate racemase | Glutathione-independent formaldehyde dehydrogenase | Steroid Delta-isomerase,ORGANISM | SINGLE PROTEIN,,,False,,PDG000000075.257.metadata.tsv,908.0,KT2440 | GB-1 | S16 | BIRD-1 | DOT-T1E | ND6 | PC9 | LS46 | SJTE-1 | B001,"AE015451,""KT2440"" | GB-1,""SRS211727"",""Sample FBFG"" | CP002870,""S16"" | BIRD-1,""CP002290"" | CP003734,""DOT-T1E"" | CP003588,""ND6"" | CP003738,""PC9"" | ALPV,""IDAC:181110-03"",""LS46"" | AKCL,""SJTE-1"" | B001,""ERS380183"",""GCA_000285395""",SAMN02603999 | SAMN00623059 | SAMN02603862 | SAMN02603225 | SAMN02603217 | SAMN02603188 | SAMN02604102 | SAMN02471870 | SAMN02470955 | SAMEA2272788,PRJNA267 | PRJNA17629 | PRJNA67881 | PRJNA54033 | PRJNA167844 | PRJNA162897 | PRJNA171349 | PRJNA167222 | PRJNA167271 | PRJEA68177,GCA_000007565.2 | GCA_000019125.1 | GCA_000219705.1 | GCA_000183645.1 | GCA_000281215.1 | GCA_000264665.2 | GCA_000325725.1 | GCA_000294445.2 | GCA_000271965.2 | GCA_000285395.1,ALPV00000000.2 | CAED00000000.1,2009-06,Canada | China: Shanghai | South Korea:Yellow Sea beach,Homo sapiens,,industrial wastewater | waste water | soil,
317,species,Pseudomonas syringae,1,37,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species subgroup; species,Bacteria,1,6,0.0,49,0,MEDIUM,28.17043419654645,1,CHEMBL613025,Pseudomonas syringae,ORGANISM,,,False,,,,,,,,,,,,,,,
76761,species,Pseudomonas veronii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas veronii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
415010,subspecies,Pseudonocardia carboxydivorans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia; Pseudonocardia alni; Pseudonocardia alni subsp. carboxydivorans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species; subspecies,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
29432,species,Psychrobacter phenylpyruvicus,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Psychrobacter; Psychrobacter phenylpyruvicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1945521,species,Psychrobacter piechaudii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Psychrobacter; Psychrobacter piechaudii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
2261,species,Pyrococcus furiosus,1,1,True,False,False,root; cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus furiosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
34038,species,Rahnella aquatilis,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Rahnella; Rahnella aquatilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,5,6,LOW,17.143032120235095,0,,,,,,False,,,,,,,,,,,,,,,
106590,species,Ralstonia eutropha,2,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus necator,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,1,CHEMBL6195217,Cupriavidus necator,ORGANISM,,,False,,,,,,,,,,,,,,,
190721,species,Ralstonia insidiosa,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia insidiosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,0,,,,,,False,,,,,,,,,,,,,,,
105219,species,Ralstonia mannitolilytica,1,11,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia mannitolilytica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,2.0,6,15,MEDIUM,14.699364044852569,0,,,,,,False,,,,,,,,,,,,,,,
329,species,Ralstonia pickettii,2,9,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia pickettii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,1,1.0,6,11,MEDIUM,22.84723117477652,1,CHEMBL6195375,Ralstonia pickettii,ORGANISM,,,False,,,,,,,,,,,,,,,
305,species,Ralstonia solanacearum,1,14,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; Ralstonia solanacearum species complex; Ralstonia solanacearum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,2,0.0,19,2,MEDIUM,22.145699244682174,1,CHEMBL612602,Ralstonia solanacearum,ORGANISM,,,False,,,,,,,,,,,,,,,
54291,species,Raoultella ornithinolytica,1,16,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella ornithinolytica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,24,5,0.0,7,22,MEDIUM,31.783483631485296,0,,,,,,False,,,,,,,,,,,,,,,
575,species,Raoultella planticola,2,18,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella planticola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,16,2,3.0,9,21,MEDIUM,32.00524688279752,1,CHEMBL613271,Raoultella planticola,ORGANISM,,,False,,,,,,,,,,,,,,,
577,species,Raoultella terrigena,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella terrigena,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,1,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
1646,species,Renibacterium salmoninarum,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Renibacterium; Renibacterium salmoninarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,3.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
1061,species,Rhodobacter capsulatus,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Rhodobacter group; Rhodobacter; Rhodobacter capsulatus,no rank; cellular root; domain; kingdom; phylum; class; order; no rank; genus; species,Bacteria,0,1,0.0,4,0,LOW,10.126631103850338,2,CHEMBL1293288 | CHEMBL3313837,2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Xanthine dehydrogenase,SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
1833,species,Rhodococcus erythropolis,2,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus erythropolis group; Rhodococcus erythropolis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,4,0,1.0,1,3,LOW,12.676076274775909,1,CHEMBL4296596,Rhodococcus erythropolis,ORGANISM,,,False,,,,,,,,,,,,,,,
33008,species,Rhodococcus globerulus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus globerulus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
223392,species,Rhodococcus gordoniae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus gordoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
1829,species,Rhodococcus rhodochrous,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus rhodochrous,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,3,0,LOW,9.704060527839234,1,CHEMBL2367135,Rhodococcus rhodochrous,ORGANISM,,,False,,,,,,,,,,,,,,,
45262,species,Rickettsia aeschlimannii,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia aeschlimannii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,3,8,0.0,15,1,MEDIUM,26.69294196824707,0,,,,,,False,,,,,,,,,,,,,,,
35788,species,Rickettsia africae,1,12,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia africae,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,4,9,0.0,11,3,MEDIUM,27.15633453877843,0,,,,,,False,,,,,,,,,,,,,,,
786,species,Rickettsia akari,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia akari,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,0,3,1.0,5,3,LOW,15.890269151739728,0,,,,,,False,,,,,,,,,,,,,,,
33989,species,Rickettsia amblyommatis,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia amblyommatis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,1,4,0.0,8,0,LOW,18.58702534622318,0,,,,,,False,,,,,,,,,,,,,,,
1068590,species,Rickettsia asembonensis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia asembonensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,2,0,0.0,5,0,LOW,13.353246500812713,0,,,,,,False,,,,,,,,,,,,,,,
787,species,Rickettsia australis,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia australis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,2,2,0.0,6,0,LOW,17.419836765953335,0,,,,,,False,,,,,,,,,,,,,,,
33990,species,Rickettsia bellii,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; belli group; Rickettsia bellii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,3,4,0.0,12,0,MEDIUM,23.198237969089547,0,,,,,,False,,,,,,,,,,,,,,,
781,species,Rickettsia conorii,1,12,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia conorii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,9,12,2.0,18,35,MEDIUM,37.40812685598532,0,,,,,,False,,,,,,,,,,,,,,,
42862,species,Rickettsia felis,1,38,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia felis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,32,9,0.0,48,12,MEDIUM,42.91783637286272,0,,,,,,False,,,,,,,,,,,,,,,
226665,subspecies,Rickettsia heilongjiangensis,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia conorii; Rickettsia conorii subsp. heilongjiangensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species; subspecies,Bacteria,2,1,0.0,3,0,LOW,13.405362501951728,0,,,,,,False,,,,,,,,,,,,,,,
35789,species,Rickettsia helvetica,1,17,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia helvetica,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,14,13,0.0,20,0,MEDIUM,33.97198498187173,0,,,,,,False,,,,,,,,,,,,,,,
37816,species,Rickettsia honei,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia honei,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,1,2,0.0,1,0,LOW,9.534161491043836,0,,,,,,False,,,,,,,,,,,,,,,
467174,species,Rickettsia hoogstraalii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia hoogstraalii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,0,2,0.0,3,0,LOW,10.227308671603785,0,,,,,,False,,,,,,,,,,,,,,,
35790,species,Rickettsia japonica,1,8,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia japonica,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,4,0,0.0,4,23,MEDIUM,17.66299504225485,0,,,,,,False,,,,,,,,,,,,,,,
3374102,species,Rickettsia lanei,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia lanei,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1196677,species,Rickettsia lusitaniae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia lusitaniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
35791,species,Rickettsia massiliae,1,10,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia massiliae,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,3,8,0.0,24,0,MEDIUM,28.231230300829225,0,,,,,,False,,,,,,,,,,,,,,,
109232,species,Rickettsia monacensis,1,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia monacensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,10,11,0.0,12,1,MEDIUM,30.56419500842511,0,,,,,,False,,,,,,,,,,,,,,,
45261,subspecies,Rickettsia mongolotimonae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia sibirica subgroup; Rickettsia sibirica; Rickettsia sibirica subsp. mongolitimonae,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species subgroup; species; subspecies,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
33991,species,Rickettsia montana,2,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia montanensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
35792,species,Rickettsia parkeri,1,24,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia parkeri,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,13,13,1.0,37,2,MEDIUM,39.14623875572673,0,,,,,,False,,,,,,,,,,,,,,,
782,species,Rickettsia prowazekii,1,13,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group; Rickettsia prowazekii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,9,9,2.0,21,1,MEDIUM,34.46367967564607,0,,,,,,False,,,,,,,,,,,,,,,
369822,subspecies,Rickettsia raoultii,1,10,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia conorii; Rickettsia conorii subsp. raoultii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species; subspecies,Bacteria,10,6,0.0,15,4,MEDIUM,30.90169306199243,0,,,,,,False,,,,,,,,,,,,,,,
33992,species,Rickettsia rhipicephali,1,5,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia rhipicephali,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,0,3,0.0,8,0,LOW,15.14500597004077,0,,,,,,False,,,,,,,,,,,,,,,
783,species,Rickettsia rickettsii,1,27,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia rickettsii,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,26,17,7.0,21,18,MEDIUM,44.412997067023504,0,,,,,,False,,,,,,,,,,,,,,,
35793,species,Rickettsia sibirica,1,7,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia sibirica subgroup; Rickettsia sibirica,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species subgroup; species,Bacteria,8,4,0.0,12,3,MEDIUM,27.828253195074755,0,,,,,,False,,,,,,,,,,,,,,,
35794,species,Rickettsia slovaca,1,8,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia slovaca,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,5,10,1.0,14,3,MEDIUM,30.67356342305816,0,,,,,,False,,,,,,,,,,,,,,,
334545,species,Rickettsia tamurae,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia tamurae,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,3,0,0.0,6,0,LOW,15.274728189756129,0,,,,,,False,,,,,,,,,,,,,,,
2761623,species,Rickettsia tillamookensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia tillamookensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,0,2,0.0,1,0,LOW,6.761572768804056,0,,,,,,False,,,,,,,,,,,,,,,
785,species,Rickettsia typhi,1,12,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group; Rickettsia typhi,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,12,9,3.0,13,31,MEDIUM,36.60116398194408,0,,,,,,False,,,,,,,,,,,,,,,
1085403,species,Rickettsia vini,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group; Rickettsia vini,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species group; species,Bacteria,1,1,0.0,2,0,LOW,10.345091707260169,0,,,,,,False,,,,,,,,,,,,,,,
180332,species,Robinsoniella peoriensis,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella peoriensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,0.0,0,7,LOW,9.246479418592056,0,,,,,,False,,,,,,,,,,,,,,,
301302,species,Roseburia faecis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia; Roseburia faecis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
1766656,species,Roseomonas chloroacetimidivorans,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Roseomonadaceae; Roseomonas; Roseomonas chloroacetimidivorans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
257708,species,Roseomonas gilardii,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Roseomonadaceae; Roseomonas; Roseomonas gilardii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,0,0.0,0,6,LOW,9.729550745276564,0,,,,,,False,,,,,,,,,,,,,,,
207340,species,Roseomonas mucosa,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Roseomonadaceae; Roseomonas; Roseomonas mucosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,8,LOW,12.100712129872347,0,,,,,,False,,,,,,,,,,,,,,,
693023,species,Roseomonas pecuniae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Roseomonadaceae; Muricoccus; Muricoccus pecuniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
2986475,species,Roseomonas xinghualingensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Roseomonadaceae; Roseomonas; Roseomonas xinghualingensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
2047,species,Rothia dentocariosa,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia dentocariosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,3.0,3,17,MEDIUM,19.068322982087675,0,,,,,,False,,,,,,,,,,,,,,,
43675,species,Rothia mucilaginosa,2,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia mucilaginosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,1.0,2,12,MEDIUM,11.523746703601812,1,CHEMBL6195380,Rothia mucilaginosa,ORGANISM,,,False,,,,,,,,,,,,,,,
33038,species,Ruminococcus gnavus,2,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter; Mediterraneibacter gnavus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,3,6,LOW,15.351272651007042,1,CHEMBL6195383,Ruminococcus gnavus,ORGANISM,,,False,,,,,,,,,,,,,,,
1550024,species,Ruthenibacterium lactatiformans,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruthenibacterium; Ruthenibacterium lactatiformans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,0,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
28042,species,Saccharopolyspora rectivirgula,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora; Saccharopolyspora rectivirgula,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,0,0,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
59203,subspecies,Salmonella arizonae,1,4,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. arizonae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species; subspecies,Bacteria,3,1,0.0,2,5,LOW,14.909439898728,0,,,,,,False,,,,,,,,,,,,,,,
54736,species,Salmonella bongori,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella bongori,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,5,1,LOW,17.276563512859614,1,CHEMBL6195389,Salmonella bongori,ORGANISM,,,False,,,,,,,,,,,,,,,
28901,species,Salmonella enterica,2,373,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,382,89,72.0,318,183,HIGH,79.91337912154337,2,CHEMBL613762 | CHEMBL5169210,Salmonella enterica | Threonine--tRNA ligase,ORGANISM | SINGLE PROTEIN,,,False,protein_synthesis,,,,,,,,,,,,,,
1267,species,Sarcina ventriculi,2,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Sarcina; Sarcina ventriculi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,0,20,MEDIUM,10.66914142388282,1,CHEMBL6195391,Sarcina ventriculi,ORGANISM,,,False,,,,,,,,,,,,,,,
52773,species,Schaalia meyeri,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia meyeri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL612289,Schaalia meyeri,ORGANISM,,,False,,,,,,,,,,,,,,,
1660,species,Schaalia odontolytica,2,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia odontolytica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,1,CHEMBL6195063,Schaalia odontolytica,ORGANISM,,,False,,,,,,,,,,,,,,,
131111,species,Schaalia turicensis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Schaalia; Schaalia turicensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,1,CHEMBL6195095,Actinomyces turicensis,ORGANISM,,,False,,,,,,,,,,,,,,,
61651,species,Serratia ficaria,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia ficaria,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
47917,species,Serratia fonticola,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia fonticola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,1,0.0,7,6,LOW,22.20619999535558,1,CHEMBL5042,Carbapenem-hydrolizing beta-lactamase SFC-1,SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
614,species,Serratia liquefaciens,1,2,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia liquefaciens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,4,4,LOW,17.281246460764002,1,CHEMBL614394,Serratia liquefaciens,ORGANISM,,,False,,,,,,,,,,,,,,,
615,species,Serratia marcescens,1,122,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia marcescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,16,12,23.0,78,138,HIGH,52.16552230477116,8,CHEMBL614593 | CHEMBL5423 | CHEMBL5157 | CHEMBL5181 | CHEMBL5348 | CHEMBL5693 | CHEMBL1075256 | CHEMBL4105964,Serratia marcescens | Chitinase A | Carbapenem-hydrolyzing beta-lactamase SME-3 | Chitinase C1 | Chitinase B | Beta-lactamase | Proline iminopeptidase | Metallo-beta-lactamase type 2,ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,,,,,,,,,,,,,,
618,species,Serratia odorifera,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia odorifera,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,3,6,LOW,14.422559399134329,0,,,,,,False,,,,,,,,,,,,,,,
82996,species,Serratia plymuthica,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia plymuthica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,4,2,LOW,15.619692547190889,1,CHEMBL6195396,Serratia plymuthica,ORGANISM,,,False,,,,,,,,,,,,,,,
28151,species,Serratia proteamaculans,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia proteamaculans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,1,0,LOW,7.6246189861593985,0,,,,,,False,,,,,,,,,,,,,,,
61652,species,Serratia rubidaea,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia; Serratia rubidaea,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,3,2,LOW,12.188967177627234,0,,,,,,False,,,,,,,,,,,,,,,
38313,species,Shewanella algae,4,20,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella algae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,15,3,2.0,21,31,MEDIUM,36.36741071924632,1,CHEMBL6195397,Shewanella algae,ORGANISM,,,False,,PDG000000084.60.metadata.tsv,361.0,MARS 14 | NBRC 103173 | CSB04KR | MN-01 | YHL | 20-23R | AC | SYT4 | ACCC | Sh392,"ERS646591,""MARS 14"",""Shewanella algae MARS 14"" | NBRC 103173 | CSB04KR,""SRS1562840"",""Shewanella algae"" | MN-01,""saltmarshMN01"" | 13936,""YHL"" | 20-23R,""KCTC22806"" | A13,""AC"" | C36,""SYT4"" | 7,""ACCC"" | Sh392",SAMEA3221090 | SAMD00046904 | SAMN05384438 | SAMN04009396 | SAMN04492206 | SAMN07175132 | SAMN04492223 | SAMN04492226 | SAMN04492216 | SAMN08998681,PRJEB8326 | PRJDB416 | PRJNA328548 | PRJNA293692 | PRJNA312015 | PRJNA388331 | PRJNA454118,GCA_000947195.1 | GCA_001598875.1 | GCA_001858195.1 | GCA_002237105.1 | GCA_002318995.1 | GCA_002836995.1 | GCA_003024535.1 | GCA_003024575.1 | GCA_003025175.1 | GCA_003124085.1,CDQH00000000.1 | BCZT00000000.1 | MBFW00000000.1 | LIRM00000000.1 | LVDU00000000.1 | NIJL00000000.1 | LVDH00000000.1 | LVDK00000000.1 | LVCY00000000.1 | QFDC00000000.1,2015-09-10 | 2010-05-20 | 2014 | missing | 2006,"South Korea: Geomun-do | USA:GA, Skidaway Island | Taiwan | South Korea: South Sea | Argentina:Buenos Aires",Apostichopus japonicus | Homo sapiens | Upeneus japonicus,wound infection | cholecytitis | skin and soft tissue infection,Gut | salt marsh sediment | wound | intestine | Haliotis diversicolor | Meretrix lusoria | bile | skin and soft tissue infection,
1987584,species,Shewanella carassii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella carassii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,0,0,LOW,6.473890696352274,0,,,,,,False,,,,,,,,,,,,,,,
558541,species,Shewanella chilikensis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella chilikensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,1.0,1,0,LOW,12.476649250079015,0,,,,,,False,,,,,,,,,,,,,,,
256839,species,Shewanella decolorationis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella decolorationis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
768528,species,Shewanella indica,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella indica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,1.0,1,1,LOW,12.019068140831838,0,,,,,,False,,,,,,,,,,,,,,,
70863,species,Shewanella oneidensis,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,5,0,LOW,11.03823888782011,1,CHEMBL4630670,Shewanella oneidensis,ORGANISM,,,False,,,,,,,,,,,,,,,
24,species,Shewanella putrefaciens,2,18,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella putrefaciens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,12,2,5.0,9,17,MEDIUM,31.54245045717298,1,CHEMBL5291645,Shewanella putrefaciens,ORGANISM,,,False,,,,,,,,,,,,,,,
755175,species,Shewanella seohaensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella seohaensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,1,0,LOW,9.704060527839234,0,,,,,,False,,,,,,,,,,,,,,,
332186,species,Shewanella xiamenensis,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella xiamenensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,1.0,1,0,LOW,11.325920960271892,0,,,,,,False,,,,,,,,,,,,,,,
621,species,Shigella boydii,1,7,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella boydii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,11,1,MEDIUM,15.197121971179785,1,CHEMBL614395,Shigella boydii,ORGANISM,,,False,,,,,,,,,,,,,,,
622,species,Shigella dysenteriae,1,15,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,8,0.0,16,3,MEDIUM,28.58178646314603,3,CHEMBL612619 | CHEMBL3856169 | CHEMBL3879822,Shigella dysenteriae | Shiga toxin subunit B | Shiga toxin subunit A,ORGANISM | SINGLE PROTEIN,,,False,virulence,,,,,,,,,,,,,,
623,species,Shigella flexneri,1,45,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,16,18,6.0,76,31,HIGH,49.24275362390296,1,CHEMBL614396,Shigella flexneri,ORGANISM,,,False,,,,,,,,,,,,,,,
624,species,Shigella sonnei,1,17,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,11,3,4.0,20,16,MEDIUM,35.37321104005321,1,CHEMBL614595,Shigella sonnei,ORGANISM,,,False,,,,,,,,,,,,,,,
357233,species,Siccibacter turicensis,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Siccibacter; Siccibacter turicensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
83561,species,Simkania negevensis,1,6,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Parachlamydiales; Simkaniaceae; Simkania; Simkania negevensis,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; genus; species,Bacteria,3,2,1.0,9,0,LOW,21.740234136574013,0,,,,,,False,,,,,,,,,,,,,,,
382,species,Sinorhizobium meliloti,3,13,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium; Sinorhizobium meliloti,no rank; cellular root; domain; kingdom; phylum; class; order; family; no rank; genus; species,Bacteria,1,0,0.0,8,0,LOW,13.75871160892088,2,CHEMBL612603 | CHEMBL3484,Sinorhizobium meliloti | Beta-galactosidase,ORGANISM | SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
2094562,species,Siphonobacter curvatus,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Cytophagia; Cytophagales; Cytophagaceae; Siphonobacter; Siphonobacter curvatus,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
84109,species,Slackia exigua,2,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia; Slackia exigua,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,1,CHEMBL6195399,Slackia exigua,ORGANISM,,,False,,,,,,,,,,,,,,,
102148,species,Solobacterium moorei,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium; Solobacterium moorei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,1,6,LOW,11.885536748207317,1,CHEMBL6195400,Solobacterium moorei,ORGANISM,,,False,,,,,,,,,,,,,,,
28454,species,Sphingobacterium multivorum,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium; Sphingobacterium multivorum,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,0,7,LOW,9.010913347279288,0,,,,,,False,,,,,,,,,,,,,,,
13689,species,Sphingomonas paucimobilis,2,13,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; Sphingomonas paucimobilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,0,2.0,10,37,MEDIUM,26.61318541039933,3,CHEMBL3908 | CHEMBL612684 | CHEMBL3217400,"Lignostilbene alpha, beta-dioxygenase | Sphingomonas paucimobilis | Serine palmitoyltransferase",SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
2141,species,Spiroplasma ixodetis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma; Spiroplasma ixodetis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,3,2,LOW,10.802672816507345,0,,,,,,False,,,,,,,,,,,,,,,
985762,species,Staphylococcus agnetis,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus agnetis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
985002,species,Staphylococcus argenteus,1,7,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus argenteus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,6,2,3.0,1,6,LOW,19.2637122363204,0,,,,,,False,,,,,,,,,,,,,,,
29378,species,Staphylococcus arlettae,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus arlettae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,3,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
1280,species,Staphylococcus aureus,1,1642,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,491,272,515.0,1905,2882,HIGH,99.84494090119638,64,CHEMBL1982 | CHEMBL4114 | CHEMBL3994 | CHEMBL2565 | CHEMBL2549 | CHEMBL3825 | CHEMBL3512 | CHEMBL4726 | CHEMBL4088 | CHEMBL4089 | CHEMBL3436 | CHEMBL352 | CHEMBL4268 | CHEMBL4269 | CHEMBL4623 | CHEMBL4841 | CHEMBL3329 | CHEMBL4910 | CHEMBL5322 | CHEMBL5323 | CHEMBL5324 | CHEMBL5362 | CHEMBL5341 | CHEMBL5096 | CHEMBL5114 | CHEMBL5115 | CHEMBL5440 | CHEMBL5643 | CHEMBL6187 | CHEMBL1075258 | CHEMBL1075259 | CHEMBL1681616 | CHEMBL1681620 | CHEMBL1770035 | CHEMBL1921666 | CHEMBL2010635 | CHEMBL2150841 | CHEMBL2163178 | CHEMBL2163181 | CHEMBL2331056 | CHEMBL2362972 | CHEMBL2364096 | CHEMBL2424506 | CHEMBL2429707 | CHEMBL3038482 | CHEMBL3038508 | CHEMBL3217378 | CHEMBL3559681 | CHEMBL3596081 | CHEMBL3706557 | CHEMBL3707181 | CHEMBL3988546 | CHEMBL3989385 | CHEMBL4295563 | CHEMBL4295710 | CHEMBL4295968 | CHEMBL4523101 | CHEMBL4523173 | CHEMBL4523943 | CHEMBL4524023 | CHEMBL4632349 | CHEMBL4632350 | CHEMBL4665583 | CHEMBL5465385,"Isoleucine--tRNA ligase | Beta-lactamase | Enoyl-[acyl-carrier-protein] reductase [NADPH] FabI | Penicillin-binding protein 2b | Penicillin-binding protein 4 | Penicillin-binding protein 2 | Penicillin-binding protein 2a | Receptor-histidine kinase AgrC | DNA topoisomerase 4 subunit A | UDP-N-acetylenolpyruvoylglucosamine reductase | Phenylalanine--tRNA ligase alpha subunit | Staphylococcus aureus | Penicillin-binding protein 1 | Penicillin-binding protein 3 | UDP-N-acetylmuramate--L-alanine ligase | UDP-N-acetylmuramoylalanine--D-glutamate ligase | Sortase B | DNA polymerase III PolC-type | Deoxyguanosine kinase | Thymidine kinase | Deoxyadenosine kinase | Sortase A | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | Cell division protein FtsZ | Quinolone resistance protein NorA | Glutamyl endopeptidase | 4,4'-diapophytoene synthase | DnaC helicase | MecA | Malonyl CoA-acyl carrier protein transacylase | Alpha-hemolysin | Accessory gene regulator protein A | Dihydrofolate reductase | Phospho-N-acetylmuramoyl-pentapeptide-transferase | DNA gyrase subunit B | Peptide deformylase | DNA topoisomerase 4 subunit B | Serine protease SplB | DNA ligase | HTH-type transcriptional regulator MgrA | Penicillin-binding protein | 70S ribosome | DNA gyrase subunit A | Signal peptidase IB | DNA gyrase | Topoisomerase IV | Dihydroneopterin aldolase | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase | Fluoroquinolone resistance protein | Methicillin resistance mecR1 protein | Bifunctional ligase/repressor BirA | ABC transporter GrfA | Poly-N-acetylglucosamine | rRNA adenine N-6-methyltransferase | Ribonuclease P protein component | Sensor protein kinase WalK | 2-dehydropantoate 2-reductase | Arsenate reductase | Alkaline phosphatase synthesis transcriptional regulatory protein | Teichoic acid D-alanyltransferase | Biofilm | Peptidoglycan | Elongation factor G | Metallothiol transferase FosB",SINGLE PROTEIN | ORGANISM | PROTEIN FAMILY | PROTEIN NUCLEIC-ACID COMPLEX | PROTEIN COMPLEX | UNKNOWN | OLIGOSACCHARIDE | MACROMOLECULE,,,False,beta_lactam_resistance | cell_wall_biosynthesis | dna_replication | fatty_acid_biosynthesis | folate_metabolism | protein_synthesis | rna_transcription,PDG000000073.1295.metadata.tsv,173741.0,RF122 | N315 | Mu50 | Mu3 | Newman | MW2 | COL | NCTC 8325 | FPR3757 | JH9,"ERS610121,""GCA_000009005"",""RF122"" | BA000018.AP003139,""N315"" | BA000017.AP003367,""Mu50"" | AP009324,""Mu3"" | AP009351,""Newman"" | BA000033,""MW2"" | COL,""CP000046"" | CP000253,""NCTC 8325"" | CP000255,""FPR3757"" | CP000703,""JH9""",SAMEA3138186 | SAMD00061099 | SAMD00061098 | SAMD00060910 | SAMD00060913 | SAMD00061104 | SAMN02603996 | SAMN02604235 | SAMN02604150 | SAMN02598343,PRJNA63 | PRJNA264 | PRJNA263 | PRJDA18509 | PRJDA18801 | PRJNA306 | PRJNA238 | PRJNA237 | PRJNA16313 | PRJNA15757,GCA_000009005.1 | GCA_000009645.1 | GCA_000009665.1 | GCA_000010445.1 | GCA_000010465.1 | GCA_000011265.1 | GCA_000012045.1 | GCA_000013425.1 | GCA_000013465.1 | GCA_000016805.1,,,Ireland,Bos taurus (cow),,,
29379,species,Staphylococcus auricularis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus auricularis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,2,1,LOW,8.26565016558033,1,CHEMBL5291674,Staphylococcus auricularis,ORGANISM,,,False,,,,,,,,,,,,,,,
29388,species,Staphylococcus capitis,1,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus capitis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,2.0,4,22,MEDIUM,19.853799051788148,1,CHEMBL612681,Staphylococcus capitis,ORGANISM,,,False,,,,,,,,,,,,,,,
29380,species,Staphylococcus caprae,1,5,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus caprae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,1.0,7,12,MEDIUM,21.515489303892824,0,,,,,,False,,,,,,,,,,,,,,,
1281,species,Staphylococcus carnosus,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus carnosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,0,LOW,4.394449154672439,1,CHEMBL614618,Staphylococcus carnosus,ORGANISM,,,False,,,,,,,,,,,,,,,
46126,species,Staphylococcus chromogenes,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus chromogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,0,1,LOW,7.6246189861593985,1,CHEMBL5209647,Staphylococcus chromogenes,ORGANISM,,,False,,,,,,,,,,,,,,,
29382,species,Staphylococcus cohnii,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus cohnii species complex; Staphylococcus cohnii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,2,1.0,1,11,MEDIUM,13.405362501951728,1,CHEMBL615097,Staphylococcus cohnii,ORGANISM,,,False,,,,,,,,,,,,,,,
70255,species,Staphylococcus condimenti,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus condimenti,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,2,LOW,6.643789733147672,0,,,,,,False,,,,,,,,,,,,,,,
1986155,species,Staphylococcus cornubiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group; Staphylococcus cornubiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,1,0.0,0,0,LOW,6.473890696352274,0,,,,,,False,,,,,,,,,,,,,,,
53344,species,Staphylococcus delphini,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group; Staphylococcus delphini,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,1,0.0,0,0,LOW,6.473890696352274,1,CHEMBL5291644,Staphylococcus delphini,ORGANISM,,,False,,,,,,,,,,,,,,,
1282,species,Staphylococcus epidermidis,1,167,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus epidermidis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,41,16,61.0,103,303,HIGH,60.64356947250539,4,CHEMBL353 | CHEMBL2331040 | CHEMBL2364152 | CHEMBL4523931,Staphylococcus epidermidis | DNA gyrase | Thioredoxin reductase | Chloramphenicol acetyltransferase,ORGANISM | PROTEIN COMPLEX | SINGLE PROTEIN,,,False,dna_replication,,,,,,,,,,,,,,
46127,species,Staphylococcus felis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus felis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,0.0,0,1,LOW,9.534161491043838,0,,,,,,False,,,,,,,,,,,,,,,
1283,species,Staphylococcus haemolyticus,1,27,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus haemolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,9,3,6.0,14,31,MEDIUM,34.26703066175726,1,CHEMBL612507,Staphylococcus haemolyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
1290,species,Staphylococcus hominis,1,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus hominis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,3,2.0,6,32,MEDIUM,26.74920384435116,1,CHEMBL614423,Staphylococcus hominis,ORGANISM,,,False,,,,,,,,,,,,,,,
1284,species,Staphylococcus hyicus,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus hyicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,2,4,LOW,14.0339711613741,1,CHEMBL614619,Staphylococcus hyicus,ORGANISM,,,False,,,,,,,,,,,,,,,
1285,species,Staphylococcus intermedius,1,13,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group; Staphylococcus intermedius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,14,3,1.0,5,8,MEDIUM,27.533400172364896,1,CHEMBL614422,Staphylococcus intermedius,ORGANISM,,,False,,,,,,,,,,,,,,,
42858,species,Staphylococcus lentus,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Mammaliicoccus; Mammaliicoccus lentus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,1,2,LOW,4.564348191467836,1,CHEMBL613149,Mammaliicoccus lentus,ORGANISM,,,False,,,,,,,,,,,,,,,
28035,species,Staphylococcus lugdunensis,1,16,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus lugdunensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,10,4,9.0,16,65,MEDIUM,37.380786476791386,1,CHEMBL613303,Staphylococcus lugdunensis,ORGANISM,,,False,,,,,,,,,,,,,,,
45972,species,Staphylococcus pasteuri,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus pasteuri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,3,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
170573,species,Staphylococcus pettenkoferi,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus pettenkoferi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,2,0.0,1,5,LOW,14.098509682511672,0,,,,,,False,,,,,,,,,,,,,,,
283734,species,Staphylococcus pseudintermedius,1,54,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group; Staphylococcus pseudintermedius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,32,4,16.0,18,22,MEDIUM,42.338459783042005,0,,,,,,False,,PDG000000042.535.metadata.tsv,7515.0,HKU10-03 | ED99 | E140 | 2001-08-299-1 | 9841787-1 | 9841998-1 | NA45 | LMG 22219 | E104 | NYVetLIRN-31,"CP002439,""HKU10-03"" | CP002478,""ED99"" | ANOI,""E140"" | 2001-08-299-1,""Dog nail; S. pseudointermedius"" | 9841787-1,""Dog skin"" | 9841998-1,""Cat skin"" | NA45,""UWMNA45"" | LMG 22219,""culture"" | E104,""E104-Genome"" | CFSAN065275,""NYVetLIRN-31"",""SRS2389989""",SAMN02603958 | SAMN02604167 | SAMN02471704 | SAMN03120291 | SAMN03120293 | SAMN03120292 | SAMN05181828 | SAMN05856671 | SAMN03366842 | SAMN07351354,PRJNA61283 | PRJNA62991 | PRJNA182979 | PRJNA264198 | PRJNA319397 | PRJNA345069 | PRJNA275881 | PRJNA324567,GCA_000185885.1 | GCA_000189495.1 | GCA_000478385.1 | GCA_001622945.1 | GCA_001622965.1 | GCA_001623005.1 | GCA_001682335.1 | GCA_001792775.2 | GCA_001940385.1 | GCA_015643335.2,ANOI00000000.1 | JTKO00000000.1 | JTKQ00000000.1 | JTKP00000000.1 | MLGE00000000.2 | LAWU00000000.1 | AAXKJU000000000.2,2001 | 1998 | 2008 | missing | 2017-06,Hong Kong | Denmark | USA | Germany: Neustadt | USA:NY,Canis lupus familiaris | dog | cat | Canine,infection | Pancreatitis,skin swab from dog with canine pyoderma | wound infection | dog nail | dog skin | cat skin | urine | pancreas | wound swab (Canis lupus familiaris),
29385,species,Staphylococcus saprophyticus,1,13,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus saprophyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,8,4,2.0,13,10,MEDIUM,31.40761854485806,1,CHEMBL613764,Staphylococcus saprophyticus,ORGANISM,,,False,,,,,,,,,,,,,,,
1295,species,Staphylococcus schleiferi,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus schleiferi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,0,1.0,4,10,MEDIUM,20.149145362808103,1,CHEMBL6195406,Staphylococcus schleiferi,ORGANISM,,,False,,,,,,,,,,,,,,,
1286,species,Staphylococcus simulans,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus simulans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,1,3.0,2,7,LOW,20.742299415659343,1,CHEMBL612425,Staphylococcus simulans,ORGANISM,,,False,,,,,,,,,,,,,,,
1292,species,Staphylococcus warneri,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus warneri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,2.0,1,17,MEDIUM,13.405362501951728,1,CHEMBL612625,Staphylococcus warneri,ORGANISM,,,False,,,,,,,,,,,,,,,
1288,species,Staphylococcus xylosus,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,1.0,1,5,LOW,13.081541382884073,1,CHEMBL2366870,Staphylococcus xylosus,ORGANISM,,,False,,,,,,,,,,,,,,,
921,species,Starkeya novella,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter; Ancylobacter novellus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
40324,species,Stenotrophomonas maltophilia,2,181,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas maltophilia group; Stenotrophomonas maltophilia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,22,3,13.0,60,139,HIGH,47.47498634978265,3,CHEMBL612366 | CHEMBL3326 | CHEMBL1287609,"Stenotrophomonas maltophilia | Beta-lactamase L1 | Catechol 2,3-dioxygenase",ORGANISM | SINGLE PROTEIN,,,False,beta_lactam_resistance,PDG000000093.293.metadata.tsv,3855.0,R551-3 | JV3 | Ab55555 | EPM1 | AU12-09 | RA8 | MTCC 434 | stmalt0435 | stmalt0377 | 13637,"R551-3,""SRS211733"",""Sample FFFI"" | CP002986,""JV3"",""SRS1566140"" | ALOG,""Ab55555"" | AMXM,""EPM1"" | APIT,""AU12-09"" | ERS379646,""GCA_000355725"",""RA8"" | MTCC 434,""gb|JALV00000000.1"" | ERS379954,""GCA_000455625"",""stmalt0435"" | ERS610755,""GCA_000499565"",""stmalt0377"" | 13637,""SMZ""",SAMN00623065 | SAMN02261377 | SAMN02596924 | SAMN02471395 | SAMN02469852 | SAMEA2272195 | SAMN02952972 | SAMEA2272536 | SAMEA3138820 | SAMN02874005,PRJNA17107 | PRJNA53943 | PRJNA164599 | PRJNA165731 | PRJNA174752 | PRJEA77887 | PRJNA235261 | PRJEB3963 | PRJEB3410 | PRJNA244350,GCA_000020665.1 | GCA_000223885.1 | GCA_000287935.1 | GCA_000344215.1 | GCA_000346445.1 | GCA_000355725.1 | GCA_000597745.1 | GCA_000455625.1 | GCA_000499565.1 | GCA_000742995.1,ALOG00000000.1 | AMXM00000000.1 | APIT00000000.1 | CALM00000000.1 | JALV00000000.1 | CBQU000000000.1 | CBQT000000000.1,2012-02,Portugal | Australia,Homo sapiens,,catheter tip,
2963283,species,Stenotrophomonas muris,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas muris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,0,,,,,,False,,,,,,,,,,,,,,,
1384509,species,Streptobacillus felis,1,1,True,False,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Streptobacillus; Streptobacillus felis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
34105,species,Streptobacillus moniliformis,1,8,True,False,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Streptobacillus; Streptobacillus moniliformis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,11,5,4.0,2,33,MEDIUM,27.55320279966108,0,,,,,,False,,,,,,,,,,,,,,,
1712031,species,Streptobacillus notomytis,1,2,True,False,False,root; cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Streptobacillus; Streptobacillus notomytis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,0,4,LOW,8.540909718033554,0,,,,,,False,,,,,,,,,,,,,,,
1326,species,Streptococcus acidominimus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus acidominimus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,7,LOW,7.624618986159398,0,,,,,,False,,,,,,,,,,,,,,,
1311,species,Streptococcus agalactiae,1,91,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus agalactiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,27,23,20.0,72,142,HIGH,55.36716624319337,1,CHEMBL614622,Streptococcus agalactiae,ORGANISM,,,False,,PDG000000089.368.metadata.tsv,48590.0,2603V/R | A909 | NEM316 | ATCC 13813 | GD201008-001 | FSL S3-026 | ZQ0910 | GB00112 | FSL S3-277 | FSL C1-494,"2603V/R,""AE009948"" | A909,""CP000114"" | ERS610265,""GCA_000196055"",""NEM316"" | ATCC 13813,""ATCC:13813"",""SRS173799"" | CP003810,""GD201008-001"" | AEXT,""FSL S3-026"" | AKAP,""ZQ0910"" | AKXO00000000,""GB00112"",""SRS347533"" | 1132710704120 Streptococcus agalactiae FSL S3-277 SAG21-PE-ILI3-2 Sample,""FSL S3-277"",""SRS333738"" | 1132710704124 Streptococcus agalactiae FSL C1-494 SAG24-PE-ILI5-2 Sample,""FSL C1-494"",""SRS333751""",SAMN02604013 | SAMN02604011 | SAMEA3138330 | SAMN00217013 | SAMN02603155 | SAMN02428925 | SAMN02469855 | SAMN01084069 | SAMN00993314 | SAMN00993327,PRJNA330 | PRJNA326 | PRJNA334 | PRJNA53057 | PRJNA169338 | PRJNA46683 | PRJNA158929 | PRJNA161909 | PRJNA86153 | PRJNA86157,GCA_000007265.1 | GCA_000012705.1 | GCA_000196055.1 | GCA_000186445.1 | GCA_000299135.1 | GCA_000221325.2 | GCA_000264975.1 | GCA_000291585.1 | GCA_000289775.1 | GCA_000289755.1,AEQQ00000000.1 | AEXT00000000.1 | AKAP00000000.1 | AKXO00000000.1 | ALQC00000000.1 | ALQD00000000.1,missing,not determined,Homo sapiens,,oral cavity | bovine milk,serovar III
29389,species,Streptococcus alactolyticus,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus alactolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,0,6,LOW,8.419800845407588,0,,,,,,False,,,,,,,,,,,,,,,
1328,species,Streptococcus anginosus,1,26,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group; Streptococcus anginosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,14,3,7.0,9,125,MEDIUM,35.499174343049894,1,CHEMBL6195408,Streptococcus anginosus,ORGANISM,,,False,,,,,,,,,,,,,,,
1335,species,Streptococcus bovis,2,14,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus equinus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,4,5.0,4,72,MEDIUM,29.06724784579665,1,CHEMBL613304,Streptococcus equinus,ORGANISM,,,False,,,,,,,,,,,,,,,
1329,species,Streptococcus canis,1,9,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus canis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,11,2,2.0,5,14,MEDIUM,27.09953558973504,0,,,,,,False,,,,,,,,,,,,,,,
76860,species,Streptococcus constellatus,1,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group; Streptococcus constellatus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,2,1,2.0,1,89,MEDIUM,16.636660846818486,1,CHEMBL613151,Streptococcus constellatus,ORGANISM,,,False,,,,,,,,,,,,,,,
45634,species,Streptococcus cristatus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus cristatus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,7,LOW,8.317766166719343,0,,,,,,False,,,,,,,,,,,,,,,
231233,species,Streptococcus devriesei,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus devriesei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1317,species,Streptococcus downei,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus downei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,1,0,LOW,5.545177444479562,0,,,,,,False,,,,,,,,,,,,,,,
1334,species,Streptococcus dysgalactiae,1,35,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus dysgalactiae group; Streptococcus dysgalactiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,34,10,8.0,43,61,MEDIUM,48.85760977366159,1,CHEMBL1075341,Streptococcus dysgalactiae,ORGANISM,,,False,,,,,,,,,,,,,,,
1336,species,Streptococcus equi,1,34,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus dysgalactiae group; Streptococcus equi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,12,6,18.0,19,32,MEDIUM,40.4615747645814,1,CHEMBL612427,Streptococcus equi,ORGANISM,,,False,,PDG000000103.74.metadata.tsv,3242.0,MGCS10565; ATCC BAA1716 | 4047 | H70 | ATCC 35246 | BHS5 | SzS31A1 | CY | CECT 5772 | Sz4is | SzAM35,"ATCC:BAA-1716,""CP001129"",""MGCS10565; ATCC BAA1716"" | 4047,""ERS379850"",""GCA_000026585"" | ERS379648,""GCA_000026605"",""H70"" | ATCC 35246,""ATCC:35246"",""CP002904"" | BHS5,""ERS379467"",""GCA_000208725"" | SzS31A1 | CY,""Streptococcus equi subsp. zooepidemicus CY"" | AWEX,""CCUG:47520"",""CECT 5772"" | Sz4is | SzAM35",SAMN02603943 | SAMEA2272426 | SAMEA2272197 | SAMN02603034 | SAMEA2272004 | SAMN02221861 | SAMN02997653 | SAMN02951929 | SAMN02298715 | SAMN02298723,PRJNA30781 | PRJEA30765 | PRJEA30767 | PRJNA68327 | PRJEA40565 | PRJNA210018 | PRJNA221123 | PRJNA217363 | PRJNA214018,GCA_000020765.1 | GCA_000026585.1 | GCA_000026605.1 | GCA_000219765.1 | GCA_000208725.1 | GCA_000445225.2 | GCA_000696505.1 | GCA_000706805.1 | GCA_000876215.1 | GCA_000876275.1,CABY00000000.1 | AUXA00000000.2 | AWEX00000000.1 | JAUE00000000.1 | JATY00000000.1,1990 | 2000 | 1998-10-23 | 2007,"United Kingdom:New Forest | United Kingdom:Newmarket | Denmark | China: Nanjing | Iceland | USA: Lexington, Kentucky",mare | pig | dormant mare,,horse with strangles | nasal swab taken from a healthy Thoroughbred racehorse | equine infectious endometritis | uterus | placenta,
165758,species,Streptococcus gallinaceus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus gallinaceus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
315405,species,Streptococcus gallolyticus,1,18,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus gallolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,2.0,3,41,MEDIUM,21.38355919263528,0,,,,,,False,,,,,,,,,,,,,,,
1302,species,Streptococcus gordonii,1,15,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus gordonii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,3,0.0,3,25,MEDIUM,18.742900581653046,1,CHEMBL613152,Streptococcus gordonii,ORGANISM,,,False,,,,,,,,,,,,,,,
254785,species,Streptococcus halichoeri,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus halichoeri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,2.0,0,1,LOW,7.284820912568604,0,,,,,,False,,,,,,,,,,,,,,,
102684,species,Streptococcus infantarius,1,5,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus infantarius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,1,1,LOW,10.632773779711949,0,,,,,,False,,,,,,,,,,,,,,,
1346,species,Streptococcus iniae,1,9,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus iniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,3,3.0,9,3,LOW,28.14845779840892,1,CHEMBL5442684,Streptococcus iniae,ORGANISM,,,False,,PDG000000085.33.metadata.tsv,118.0,9117 | IUSA1 | KCTC 11634BP | YSFST01-82 | CAIM 527 | 89353 | QMA0248 | FP5228 | GX005 | YM011,"9117,""SRS000262"",""Streptococcus iniae"" | AOCT,""IUSA1"" | BANM,""KCTC 11634BP"" | S_iniae,""YSFST01-82"" | CAIM 527,""CAIM 527T"",""SAMN04304510"",""SRS1296079"" | 89353,""Si 89353"" | QMA0248,""SRS2293471"" | FP5228,""S. iniae"" | GX005,""SRS3786106"" | SRS3786079,""YM011""",SAMN00000311 | SAMN02471473 | SAMD00036648 | SAMN03286870 | SAMN03093205 | SAMN05967356 | SAMN06909305 | SAMN07962172 | SAMN10067964 | SAMN10067963,PRJNA16831 | PRJNA184067 | PRJDB704 | PRJNA271544 | PRJNA263021 | PRJNA352154 | PRJNA385746 | PRJNA416692 | PRJNA491220 | PRJNA491219,GCA_000300915.1 | GCA_000331915.2 | GCA_000320965.2 | GCA_000831485.1 | GCA_001595425.1 | GCA_001885145.1 | GCA_002220115.1 | GCA_002787125.1 | GCA_003589905.1 | GCA_003589945.1,AMOO00000000.1 | AOCT00000000.2 | BANM00000000.1 | LSNB00000000.1,2006-07 | 2012-11-01 | 1972-03 | 2000 | 2009-03 | 2005 | 2006-06 | 2008-08,"Spain: Gran Canaria | South Korea: Jeju island | USA: Buffalo | Taiwan: Kaohsiung | Australia: South Australia | Korea: Wando,Jeollanam-do | China:Guangxi | China",Sparus aurata | Inia geoffrensis | Oreochromis niloticus | Lates calcarifer | Paralichthys olivaceus | tilapia,,fish | tissue from oliver flounder | Subcutaneous abscess foci in an Amazon freshwater dolphin suffering Golf ball disease | aquaculture tilapia pond | spleen,
1338,species,Streptococcus intermedius,1,12,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group; Streptococcus intermedius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,1,7.0,9,113,MEDIUM,28.0326259828838,1,CHEMBL3301402,Streptococcus intermedius,ORGANISM,,,False,,,,,,,,,,,,,,,
684066,species,Streptococcus lactarius,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus lactarius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
150055,species,Streptococcus lutetiensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus lutetiensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
33040,species,Streptococcus milleri,1,5,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus milleri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,4.0,5,36,MEDIUM,21.33376852813226,0,,,,,,False,,,,,,,,,,,,,,,
229549,species,Streptococcus minor,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus minor,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,0,LOW,4.394449154672439,1,CHEMBL1075360,Streptococcus minor,ORGANISM,,,False,,,,,,,,,,,,,,,
28037,species,Streptococcus mitis,1,17,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus mitis group; Streptococcus mitis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,6,6,5.0,22,89,MEDIUM,37.38217073181932,1,CHEMBL614952,Streptococcus mitis,ORGANISM,,,False,,,,,,,,,,,,,,,
1309,species,Streptococcus mutans,1,43,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus mutans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,10,17,1.0,50,15,HIGH,42.08070761186328,2,CHEMBL612426 | CHEMBL4523939,Streptococcus mutans | Sortase A,ORGANISM | SINGLE PROTEIN,,,False,,PDG000000140.28.metadata.tsv,566.0,NN2025 | UA159 | GS-5 | LJ23 | U2B | 8ID3 | S1B | SA38 | SA41 | SF12,"AP010655,""NN2025"" | AE014133,""UA159"" | CP003686,""GS-5"" | AP012336,""LJ23"" | AGWE,""U2B"" | 8ID3,""AHRB"" | AHRC,""S1B"" | AHRD,""SA38"" | AHRE,""SA41"" | AHRF,""SF12""",SAMD00060939 | SAMN02604090 | SAMN02603489 | SAMD00061051 | SAMN02428989 | SAMN02429079 | SAMN02428982 | SAMN02428983 | SAMN02429080 | SAMN02429033,PRJDA28997 | PRJNA333 | PRJNA168469 | PRJDB67 | PRJNA49851 | PRJNA49757 | PRJNA49853 | PRJNA49855 | PRJNA49859 | PRJNA49861,GCA_000091645.1 | GCA_000007465.2 | GCA_000271865.1 | GCA_000284575.1 | GCA_000340175.1 | GCA_000339595.1 | GCA_000339055.1 | GCA_000339615.1 | GCA_000339075.1 | GCA_000339095.1,AGWE00000000.1 | AHRB00000000.1 | AHRC00000000.1 | AHRD00000000.1 | AHRE00000000.1 | AHRF00000000.1,2005 | 2001,Turkey | Brazil | South Africa | USA,Homo sapiens,,oral cavity,
1303,species,Streptococcus oralis,1,11,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus oralis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,3,1.0,13,22,MEDIUM,28.31370995822141,1,CHEMBL613305,Streptococcus oralis,ORGANISM,,,False,,,,,,,,,,,,,,,
1318,species,Streptococcus parasanguinis,2,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parasanguinis group; Streptococcus parasanguinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,0,0,0.0,1,10,MEDIUM,5.863631175598098,1,CHEMBL6195410,Streptococcus parasanguinis,ORGANISM,,,False,,,,,,,,,,,,,,,
1501662,species,Streptococcus parasuis,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parasuis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,0.0,0,0,LOW,7.16703787691222,1,CHEMBL5465490,Streptococcus parasuis,ORGANISM,,,False,,,,,,,,,,,,,,,
1348,species,Streptococcus parauberis,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parauberis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
197614,species,Streptococcus pasteurianus,1,1,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pasteurianus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,2,LOW,1.0986122886681098,1,CHEMBL613153,Streptococcus pasteurianus,ORGANISM,,,False,,,,,,,,,,,,,,,
119224,species,Streptococcus phocae,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus phocae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,1,LOW,2.079441541679836,0,,,,,,False,,,,,,,,,,,,,,,
82348,species,Streptococcus pluranimalium,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pluranimalium,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,2,4,LOW,12.64767680025421,0,,,,,,False,,,,,,,,,,,,,,,
1313,species,Streptococcus pneumoniae,2,377,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,63,57,70.0,594,554,HIGH,75.60399626063517,15,CHEMBL2757 | CHEMBL347 | CHEMBL1075022 | CHEMBL1075024 | CHEMBL2311225 | CHEMBL2362973 | CHEMBL2363033 | CHEMBL2363853 | CHEMBL3112380 | CHEMBL4105839 | CHEMBL4295522 | CHEMBL5498506 | CHEMBL5500297 | CHEMBL5500298 | CHEMBL5500299,rRNA adenine N-6-methyltransferase | Streptococcus pneumoniae | ParE | Enoyl-(Acyl-carrier-protein) reductase | DNA gyrase | Penicillin-binding protein | Topoisomerase IV | 70S ribosome | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Sialidase A | Neuraminidase C | Polysaccharide conjugated to Corynebacterium diphtheriae CRM197 | Polysaccharide conjugated to Corynebacterium diphtheriae toxoid | Polysaccharide conjugated to Haemophilus influenzae Protein D | Polysaccharide conjugated to Tetanus toxoid,SINGLE PROTEIN | ORGANISM | PROTEIN COMPLEX | PROTEIN FAMILY | PROTEIN NUCLEIC-ACID COMPLEX | OLIGOSACCHARIDE,,,False,cell_wall_biosynthesis | dna_replication,PDG000000074.751.metadata.tsv,124733.0,TIGR4; ATCC BAA-334 | R6 | D39 | 70585 | JJA | P1031 | Taiwan19F-14 | Hungary19A-6 | CGSP14 | TIGR4,"AE005672,""TIGR4; ATCC BAA-334"" | AE007317,""R6"" | CP000410,""D39"",""NCTC:7466"" | 70585,""CP000918"" | CP000919,""JJA"" | CP000920,""P1031"" | CP000921,""Taiwan19F-14"" | CP000936,""Hungary19A-6"" | CGSP14,""CP001033"" | AAGY,""TIGR4""",SAMN02604002 | SAMN02603218 | SAMN02604051 | SAMN02603446 | SAMN02603444 | SAMN02603445 | SAMN02603443 | SAMN02603442 | SAMN02603015 | SAMN02363423,PRJNA277 | PRJNA278 | PRJNA16374 | PRJNA28043 | PRJNA28039 | PRJNA28041 | PRJNA28037 | PRJNA28035 | PRJNA29179 | PRJNA13923,GCA_000006885.1 | GCA_000007045.1 | GCA_000014365.2 | GCA_000018965.1 | GCA_000018985.1 | GCA_000019005.1 | GCA_000019025.1 | GCA_000019265.1 | GCA_000019985.1 | GCA_000167615.1,AAGY00000000.2,,Norway: Kongsvinger,Homo sapiens,,clinical isolate from the blood of a 30 year old patient,
1340,species,Streptococcus porcinus,1,5,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus porcinus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,1,LOW,8.55333223803211,0,,,,,,False,,,,,,,,,,,,,,,
257758,species,Streptococcus pseudopneumoniae,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pseudopneumoniae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,1.0,8,2,LOW,18.32305980038872,1,CHEMBL6195411,Streptococcus pseudopneumoniae,ORGANISM,,,False,,,,,,,,,,,,,,,
361101,species,Streptococcus pseudoporcinus,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pseudoporcinus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,7,LOW,6.473890696352274,0,,,,,,False,,,,,,,,,,,,,,,
1314,species,Streptococcus pyogenes,2,271,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pyogenes,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,95,86,24.0,515,312,HIGH,75.06960578951947,7,CHEMBL356 | CHEMBL2034806 | CHEMBL2346485 | CHEMBL2364103 | CHEMBL2364671 | CHEMBL3988594 | CHEMBL4523177,Streptococcus pyogenes | Streptopain | Streptokinase | 70S ribosome | Isoleucine--tRNA ligase | Dihydrofolate reductase | UDP-glucose 6-dehydrogenase,ORGANISM | SINGLE PROTEIN | PROTEIN NUCLEIC-ACID COMPLEX,,,False,folate_metabolism | protein_synthesis,PDG000000090.704.metadata.tsv,67908.0,SF370 | MGAS8232 | MGAS315 | Manfredo | SSI-1 | MGAS10394 | MGAS5005 | MGAS6180 | MGAS9429 | M49 591,"AE004092,""SF370"" | AE009949,""MGAS8232"" | AE014074,""MGAS315"" | 000154_GCAT-20090507,""ERS000040"",""Manfredo"" | BA000034,""SSI-1"" | CP000003,""MGAS10394"" | CP000017,""MGAS5005"" | CP000056,""MGAS6180"" | CP000259,""MGAS9429"" | AAFV,""M49 591""",SAMN02604089 | SAMN02603495 | SAMN02603496 | SAMEA1705956 | SAMD00061102 | SAMN02603497 | SAMN02603500 | SAMN02603499 | SAMN02603501 | SAMN02469731,PRJNA269 | PRJNA286 | PRJNA311 | PRJNA270 | PRJNA301 | PRJNA12469 | PRJNA13888 | PRJNA13887 | PRJNA16363 | PRJNA13286,GCA_000006785.2 | GCA_000007285.1 | GCA_000007425.1 | GCA_000009385.1 | GCA_000011285.1 | GCA_000011665.1 | GCA_000011765.2 | GCA_000012165.2 | GCA_000013485.1 | GCA_000167435.2,,1952,,,,,
1304,species,Streptococcus salivarius,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus salivarius,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,1.0,9,24,MEDIUM,23.74271463711772,1,CHEMBL614620,Streptococcus salivarius,ORGANISM,,,False,,,,,,,,,,,,,,,
1305,species,Streptococcus sanguinis,1,10,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sanguinis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,5,1.0,5,22,MEDIUM,25.29361598060988,1,CHEMBL612314,Streptococcus sanguinis,ORGANISM,,,False,,,,,,,,,,,,,,,
1310,species,Streptococcus sobrinus,1,6,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sobrinus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,3,0,LOW,14.556090791758852,1,CHEMBL612316,Streptococcus sobrinus,ORGANISM,,,False,,,,,,,,,,,,,,,
1307,species,Streptococcus suis,1,82,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus suis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,110,19,31.0,62,73,HIGH,59.7765281566726,1,CHEMBL3301404,Streptococcus suis,ORGANISM,,,False,,PDG000000100.190.metadata.tsv,10384.0,SC84 | BM407 | P1/7 | ST3 | JS14 | SS12 | GZ1 | D9 | D12 | A7,"ERS379748,""GCA_000026725"",""SC84"" | BM407,""ERS380101"",""GCA_000026745"" | ERS610234,""GCA_000091905"",""P1/7"" | CP002633,""ST3"" | CP002465,""JS14"" | CP002640,""SS12"" | CP000837,""GZ1"" | CP002641,""D9"" | CP002644,""D12"" | A7,""CP002570""",SAMEA2272312 | SAMEA2272697 | SAMEA3138299 | SAMN02603319 | SAMN02603326 | SAMN02603320 | SAMN02603644 | SAMN02603321 | SAMN02603322 | SAMN02603318,PRJEA32239 | PRJEA32237 | PRJNA352 | PRJNA65245 | PRJNA61797 | PRJNA65433 | PRJNA18737 | PRJNA65435 | PRJNA65469 | PRJNA63483,GCA_000026725.1 | GCA_000026745.1 | GCA_000091905.1 | GCA_000204625.1 | GCA_000186405.1 | GCA_000231865.1 | GCA_000018185.1 | GCA_000231885.1 | GCA_000231905.1 | GCA_000233575.1,,2005 | 2004,China:Sichuan Province | Viet Nam:Ho Chi Minh City,,,human case of meningitis,
2736608,species,Streptococcus thalassemiae,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus thalassemiae group; Streptococcus thalassemiae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1308,species,Streptococcus thermophilus,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus thermophilus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,4,0.0,7,4,LOW,22.380136802615144,1,CHEMBL612315,Streptococcus thermophilus,ORGANISM,,,False,,,,,,,,,,,,,,,
55085,species,Streptococcus thoraltensis,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus thoraltensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,1,0.0,3,4,LOW,17.05810290944979,0,,,,,,False,,,,,,,,,,,,,,,
1349,species,Streptococcus uberis,1,9,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus uberis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,2,9.0,2,7,LOW,19.867959191685244,1,CHEMBL6195412,Streptococcus uberis,ORGANISM,,,False,,,,,,,,,,,,,,,
1343,species,Streptococcus vestibularis,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus vestibularis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,0,3,LOW,9.010913347279288,1,CHEMBL6195413,Streptococcus vestibularis,ORGANISM,,,False,,,,,,,,,,,,,,,
78535,species,Streptococcus viridans,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus viridans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,6.0,2,105,MEDIUM,20.52221153191552,1,CHEMBL612332,Streptococcus viridans,ORGANISM,,,False,,,,,,,,,,,,,,,
40041,subspecies,Streptococcus zooepidemicus,1,9,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus dysgalactiae group; Streptococcus equi; Streptococcus equi subsp. zooepidemicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species; subspecies,Bacteria,5,1,4.0,4,12,MEDIUM,23.077494163092293,1,CHEMBL612697,Streptococcus equi subsp. zooepidemicus,ORGANISM,,,False,,,,,,,,,,,,,,,
33903,species,Streptomyces avermitilis,1,4,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces avermitilis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,9,0,0.0,0,2,LOW,10.308952660644293,1,CHEMBL6195414,Streptomyces avermitilis,ORGANISM,,,False,,,,,,,,,,,,,,,
379067,species,Streptomyces bingchenggensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces bingchenggensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
1898,species,Streptomyces cacaoi,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces cacaoi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,1,LOW,5.0875963352323845,0,,,,,,False,,,,,,,,,,,,,,,
1902,species,Streptomyces coelicolor,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group; Streptomyces coelicolor,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,3,0.0,10,0,MEDIUM,18.920948169591306,1,CHEMBL613092,Streptomyces coelicolor,ORGANISM,,,False,,,,,,,,,,,,,,,
1911,species,Streptomyces griseus,1,2,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces griseus group; Streptomyces griseus subgroup; Streptomyces griseus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species subgroup; species,Bacteria,2,2,0.0,3,2,LOW,15.72037011494433,1,CHEMBL614990,Streptomyces griseus,ORGANISM,,,False,,,,,,,,,,,,,,,
67294,species,Streptomyces roseosporus,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces filamentosus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,1,0,LOW,9.010913347279288,0,,,,,,False,,,,,,,,,,,,,,,
78355,species,Streptomyces somaliensis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces somaliensis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,6,LOW,8.18423477409482,0,,,,,,False,,,,,,,,,,,,,,,
2482751,species,Stutzerimonas nitrititolerans,2,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Stutzerimonas; Stutzerimonas nitrititolerans,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,1,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
83771,species,Succinivibrio dextrinosolvens,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinivibrio; Succinivibrio dextrinosolvens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
28112,species,Tannerella forsythia,1,3,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Tannerella; Tannerella forsythia,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,1,1,2.0,4,18,MEDIUM,18.04088338259278,1,CHEMBL4296602,Tannerella forsythia,ORGANISM,,,False,,,,,,,,,,,,,,,
82987,species,Tatumella ptyseos,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Tatumella; Tatumella ptyseos,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,2,LOW,3.87120101090789,0,,,,,,False,,,,,,,,,,,,,,,
669041,species,Tenacibaculum dicentrarchi,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tenacibaculum; Tenacibaculum dicentrarchi,no rank; cellular root; domain; kingdom; clade; clade; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,0,LOW,1.3862943611198906,0,,,,,,False,,,,,,,,,,,,,,,
2963284,species,Terrisporobacter muris,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter; Terrisporobacter muris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,1,LOW,3.4657359027997265,0,,,,,,False,,,,,,,,,,,,,,,
2336,species,Thermotoga maritima,1,3,True,True,False,root; cellular organisms; Bacteria; Thermotogati; Thermotogota; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,7,0,LOW,12.476649250079015,1,CHEMBL3308963,Alpha-galactosidase,SINGLE PROTEIN,,,False,,,,,,,,,,,,,,,
274,species,Thermus thermophilus,1,5,True,True,False,root; cellular organisms; Bacteria; Thermotogati; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus; Thermus thermophilus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,3,0.0,7,0,LOW,14.556090791758852,3,CHEMBL4255 | CHEMBL3347254 | CHEMBL6195744,"Malate dehydrogenase | DNA polymerase I, thermostable | Thermus thermophilus",SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
43131,species,Tissierella praeacuta,2,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Tissierellia; Tissierellales; Tissierellaceae; Tissierella; Tissierella praeacuta,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,0.0,0,6,LOW,9.112948025967532,1,CHEMBL6195424,Tissierella praeacuta,ORGANISM,,,False,,,,,,,,,,,,,,,
158,species,Treponema denticola,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema; Treponema denticola,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,7,5.0,2,13,MEDIUM,20.726551058691207,1,CHEMBL5169285,Treponema denticola,ORGANISM,,,False,,,,,,,,,,,,,,,
160,species,Treponema pallidum,1,41,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema; Treponema pallidum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,12,10,5.0,31,387,MEDIUM,44.32668704031927,1,CHEMBL6195426,Treponema pallidum,ORGANISM,,,False,,PDG000000104.43.metadata.tsv,829.0,Nichols | SS14 | pertenue Samoa D | Gauthier | DAL-1 | CDC2 | Chicago | Mexico A | Fribourg-Blanc | Sea 81-4,"AE000520,""Nichols"" | SRS000280,""SS14"",""Treponema pallidum subsp. pallidum str. SS14"" | SRS000279,""Treponema pallidum subsp. pertenue str. SamoaD"",""pertenue Samoa D"" | CP002376,""Gauthier"" | CP003115,""DAL-1"" | CDC2,""CP002375"" | CP001752,""Chicago"" | Mexico A,""SRS006799"",""TPAL Sample"" | Fribourg-Blanc,""gb|CP003902.1"" | Sea 81-4,""gb|CP003679.1""",SAMN02604348 | SAMN00000318 | SAMN00000317 | SAMN02603004 | SAMN02603007 | SAMN02603003 | SAMN02604256 | SAMN00004588 | SAMN03081442 | SAMN03081438,PRJNA5 | PRJNA20067 | PRJNA30671 | PRJNA30653 | PRJNA30649 | PRJNA30651 | PRJNA39981 | PRJNA41401 | PRJNA86661 | PRJNA74337,GCA_000008605.1 | GCA_000017825.1 | GCA_000246755.1 | GCA_000246795.1 | GCA_000246815.1 | GCA_000246775.1 | GCA_000024485.1 | GCA_000304295.1 | GCA_000387485.1 | GCA_000604125.1,,,,,,,
53435,species,Treponema paraluiscuniculi,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema; Treponema paraluiscuniculi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
162,species,Treponema phagedenis,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema; Treponema phagedenis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,2,LOW,5.2574953720277815,0,,,,,,False,,,,,,,,,,,,,,,
174922,species,Treponema refringens,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Treponematales; Treponemataceae; Treponema; Treponema refringens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,0,0,LOW,4.394449154672439,0,,,,,,False,,,,,,,,,,,,,,,
2039,species,Tropheryma whippelii,2,13,True,True,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Tropherymataceae; Tropheryma; Tropheryma whipplei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,10,MEDIUM,2.3978952727983707,1,CHEMBL6195434,Tropheryma whipplei,ORGANISM,,,False,,,,,,,,,,,,,,,
57704,species,Tsukamurella carboxydivorans,2,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Tsukamurellaceae; Tsukamurella; Tsukamurella tyrosinosolvens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,1.0,0,0,LOW,4.158883083359672,0,,,,,,False,,,,,,,,,,,,,,,
29321,species,Turicella otitidis,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium otitidis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,0,3,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
134821,species,Ureaplasma parvum,1,3,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Mycoplasmoidaceae; Ureaplasma; Ureaplasma parvum,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,1,5,1.0,2,27,MEDIUM,18.35942744455959,1,CHEMBL6195436,Ureaplasma parvum,ORGANISM,,,False,,,,,,,,,,,,,,,
2130,species,Ureaplasma urealyticum,1,11,True,True,False,root; cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales; Mycoplasmoidaceae; Ureaplasma; Ureaplasma urealyticum,no rank; cellular root; domain; kingdom; phylum; order; family; genus; species,Bacteria,4,9,5.0,5,41,MEDIUM,29.62549283159829,1,CHEMBL6195437,Ureaplasma urealyticum,ORGANISM,,,False,,,,,,,,,,,,,,,
2738,species,Vagococcus fluvialis,1,4,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus; Vagococcus fluvialis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,4,0,0.0,1,7,LOW,11.982929094215963,0,,,,,,False,,,,,,,,,,,,,,,
81947,species,Vagococcus lutrae,1,2,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus; Vagococcus lutrae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,1,1,LOW,9.939626599152,0,,,,,,False,,,,,,,,,,,,,,,
29466,species,Veillonella parvula,1,5,True,True,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; Veillonella parvula,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,1.0,1,11,MEDIUM,7.336936913707618,1,CHEMBL612244,Veillonella parvula,ORGANISM,,,False,,,,,,,,,,,,,,,
663,species,Vibrio alginolyticus,1,41,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio alginolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,4,6,3.0,26,6,MEDIUM,33.47316529821908,1,CHEMBL614599,Vibrio alginolyticus,ORGANISM,,,False,,PDG000000136.152.metadata.tsv,1371.0,12G01 | ATCC 17749 | NBRC 15630 | BSW15 | BSW8 | V1 | RM-10-2 | RM-12-1 | EPGS | UCD-30C,"12G01,""AAPS"" | ATCC 17749,""CP006718"" | NBRC 15630 | BSW15,""Vibrio alginolyticus BSW15"" | BSW8,""Vibrio alginolyticus BSW8"" | SRS927574,""V1"",""Vibrio alginolyticus strain V1"" | RM-10-2 | RM-12-1 | EPGS,""Vibrio alginolyticus EPGS"" | UCD-30C,""Vibrio alginolyticus UCD-30C""",SAMN02436162 | SAMN02603463 | SAMD00041824 | SAMN03280974 | SAMN03280973 | SAMN03580732 | SAMN03795179 | SAMN03799837 | SAMN02746033 | SAMN04088202,PRJNA13571 | PRJNA184046 | PRJDB355 | PRJNA272353 | PRJNA272352 | PRJNA282906 | PRJNA288141 | PRJNA245457 | PRJNA295760,GCA_000153505.1 | GCA_000354175.2 | GCA_000467145.1 | GCA_000834085.1 | GCA_000834155.1 | GCA_001013315.1 | GCA_001267615.1 | GCA_001270205.1 | GCA_001273715.1 | GCA_001306785.1,AAPS00000000.1 | BATK00000000.1 | JXIO00000000.1 | JXIN00000000.1 | LCUM00000000.1 | LFWH00000000.1 | LFZC00000000.1 | JOKY00000000.1 | LJTE00000000.1,2014-09 | 2007 | 2015 | 2014 | 2011-09,"France: Saint Malo | Greece | Canada | China: Guangdong | USA: Garbage Beach, Woods Hole, MA",Sparus aurata | Epinephelus coioides,,Sea water | vibriosis episode | Mollusc | Mussel | sea water | seagrass sediment,
55601,species,Vibrio anguillarum,2,13,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio anguillarum,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,10,1,MEDIUM,17.077072699224235,1,CHEMBL612298,Vibrio anguillarum,ORGANISM,,,False,,,,,,,,,,,,,,,
680,species,Vibrio campbellii,1,5,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio campbellii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,1,0,0.0,5,0,LOW,11.731386068380056,2,CHEMBL4682 | CHEMBL5291658,S-ribosylhomocysteine lyase | Vibrio campbellii,SINGLE PROTEIN | ORGANISM,,,False,,,,,,,,,,,,,,,
666,species,Vibrio cholerae,3,191,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,66,69,16.0,352,79,HIGH,68.94504981116474,2,CHEMBL614402 | CHEMBL2321642,Vibrio cholerae | Neuraminidase,ORGANISM | SINGLE PROTEIN,,,False,,PDG000000055.998.metadata.tsv,21139.0,N16961 | O395 | M66-2 | MJ-1236 | MO10 | V51 | AM-19226 | MAK 757 | MZO-2 | 623-39,"AE003852,""N16961"" | CP000627,""O395"" | CP001234,""M66-2"" | CP001486,""MJ-1236"" | AAKF,""MO10"" | AAKI,""V51"" | AATY,""AM-19226"" | AAUS,""MAK 757"" | AAWF,""MZO-2"" | 623-39,""AAWG""",SAMN02603969 | SAMN02604040 | SAMN02603897 | SAMN02603569 | SAMN02435880 | SAMN02435835 | SAMN02435859 | SAMN02435868 | SAMN02435870 | SAMN02435871,PRJNA36 | PRJNA15667 | PRJNA32851 | PRJNA33555 | PRJNA15666 | PRJNA15669 | PRJNA17723 | PRJNA18263 | PRJNA18495 | PRJNA18493,GCA_000006745.1 | GCA_000016245.1 | GCA_000021605.1 | GCA_000022585.1 | GCA_000152425.1 | GCA_000152465.2 | GCA_000153785.3 | GCA_000153865.1 | GCA_000153985.3 | GCA_000154005.2,AAKF00000000.3 | AAKI00000000.3 | AATY00000000.2 | AAUS00000000.2 | AAWF00000000.2 | AAWG00000000.2,1937,Indonesia: Makassar,,,,
50719,species,Vibrio diabolicus,1,1,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio diabolicus subgroup; Vibrio diabolicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species subgroup; species,Bacteria,1,2,0.0,1,0,LOW,9.534161491043836,1,CHEMBL4523076,Vibrio diabolicus,ORGANISM,,,False,,PDG000000138.39.metadata.tsv,298.0,E0666 | TS13 | V2 | FF273 | FDAARGOS_96 | FDAARGOS_99 | FDAARGOS_105 | JBS-8-11-1 | A1SM3 | CAIM 1802,"AMPD,""E0666"" | SRS837297,""TS13"" | V2,""Vibrio alginolyticus strain V2"" | FF273 | FDA:FDAARGOS_96,""FDAARGOS_96"",""SRS1133451"" | FDA:FDAARGOS_99,""FDAARGOS_99"",""SRS1133499"" | FDA:FDAARGOS_105,""FDAARGOS_105"",""SRS1134405"" | JBS-8-11-1,""Lovell_lab_03"" | A1SM3,""SRS4278513"",""Vibrio diabolicus A1SM3"" | CAIM 1802,""Vibrio diabolicus strain CAIM 1802""",SAMN02469807 | SAMN03329625 | SAMN03580733 | SAMN04867927 | SAMN03996337 | SAMN03996254 | SAMN03996322 | SAMN08204758 | SAMN10787936 | SAMN11937831,PRJNA174757 | PRJNA274607 | PRJNA282898 | PRJNA318805 | PRJNA231221 | PRJNA423059 | PRJNA516395 | PRJNA545939,GCA_000341445.1 | GCA_000962815.1 | GCA_001010935.1 | GCA_001691185.1 | GCA_002953335.1 | GCA_002953355.1 | GCA_002953395.1 | GCA_003798525.1 | GCA_004522045.1 | GCA_006151825.1,AMPD00000000.1 | JZWD00000000.1 | LCSG00000000.1 | MAKC00000000.1 | PKPZ00000000.1 | SDKB00000000.1 | VDEN00000000.1,2012-06-12 | 2007 | 2006-09-06 | 1973 | 2013 | 2018-04 | 2003,"China: Shantou, Guangdong Province | Not Collected | Greece | USA: Massachusetts | USA:Fl | South Africa | Jordan:Amman | USA: South Carolina | Colombia: Manaure Solar Salter, La Guajira | Japan: Kamaishi",Epinephelus coioides | Dentex dentex | Homo sapiens | Environment,Vibrio infection,"ascites by plating | marine sediment | vibriosis episode | Filtered Seawater, 0.2-1 micron fraction | blister | cured hides | human | Estuary | solar saltern sediment | Coastal seawater",
685,species,Vibrio diazotrophicus,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio diazotrophicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,0,0,LOW,2.772588722239781,0,,,,,,False,,,,,,,,,,,,,,,
668,species,Vibrio fischeri,2,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio fischeri,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,1,0.0,6,0,LOW,11.808992286956402,2,CHEMBL614600 | CHEMBL5351,Aliivibrio fischeri | Transcriptional activator protein LuxR,ORGANISM | SINGLE PROTEIN,,,False,rna_transcription,,,,,,,,,,,,,,
676,species,Vibrio fluvialis,1,8,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio fluvialis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,1,0.0,7,5,LOW,18.662857873979508,1,CHEMBL614602,Vibrio fluvialis,ORGANISM,,,False,,PDG000000099.160.metadata.tsv,513.0,PG41 | I21563 | 560 | ZOR0035 | 3663 | S1110 | ATCC 33809 | NBRC 103150 | 12605 | QY27,"ASXS,""PG41"" | ASXT,""I21563"" | 560,""VF560"" | SRS699244,""ZOR0035"",""Zebrafish gut isolate  ZOR0035"" | 3663,""Vibrio fluvialis  3663"" | S1110 | ATCC 33809,""FDA:FDAARGOS_104"",""FDAARGOS_104"",""SRS1133721"" | NBRC 103150 | 12605,""Vibrio fluvialis"" | QY27",SAMN02469998 | SAMN02469992 | SAMN03002114 | SAMN03021533 | SAMN03290994 | SAMN04009994 | SAMN03996321 | SAMD00046905 | SAMN06209376 | SAMN08049309,PRJNA205118 | PRJNA205119 | PRJNA196252 | PRJNA205593 | PRJNA273365 | PRJNA293803 | PRJNA231221 | PRJDB353 | PRJNA360363 | PRJNA419315,GCA_000417625.1 | GCA_000418995.1 | GCA_000754645.1 | GCA_000799015.1 | GCA_000931495.1 | GCA_001418705.1 | GCA_001558415.2 | GCA_001598835.1 | GCA_001952955.1 | GCA_002796765.2,ASXS00000000.1 | ASXT00000000.1 | JQHW00000000.1 | JTLJ00000000.1 | JXXQ00000000.1 | LKHR00000000.1 | BCZR00000000.1,1970 | 2001 | 2013-07-17 | 2014-07-27 | 2006-10-01 | 2013 | 2014-06,Bahrain | Brazil | USA: Eugene | China: Hangzhou | Pacific Ocean: Guinea | Bangladesh:Dacca | China:Hangzhou | China: the South China Sea,Homo sapiens | Anomalocardia flexuosa | Danio rerio,Vibrio infection,patient with severe diarrhea | clinical sample | seawater | bile,
29494,species,Vibrio furnissii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio furnissii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,6,3,LOW,13.888433828636238,0,,,,,,False,,,,,,,,,,,,,,,
669,species,Vibrio harveyi,1,25,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio harveyi,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,3,6,0.0,27,2,MEDIUM,29.142542731189632,5,CHEMBL613174 | CHEMBL6100 | CHEMBL1795163 | CHEMBL5291573 | CHEMBL5291976,Vibrio harveyi | Autoinducer 2-binding periplasmic protein LuxP | Autoinducer 1 sensor kinase/phosphatase LuxN | HTH-type transcriptional regulator LuxR | LuxP/Q,ORGANISM | SINGLE PROTEIN | PROTEIN COMPLEX,,,False,rna_transcription,PDG000000083.160.metadata.tsv,302.0,HENC-01 | CAIM 1792 | ZJ0603 | AOD131 | NBRC 15634 = ATCC 14126 | VHJR7 | E385 | ATCC 33843 (392 [MAV]) | 823TEZ1 | VHJR4,"HENC-01,""SRS270163"",""VCHENC01"" | AHHQ,""CAIM 1792"" | AKIH,""ZJ0603"" | AOD131,""AOMR"" | BAOD,""NBRC 15634 = ATCC 14126"" | ERS379557,""GCA_000442925"",""VHJR7"" | E385,""SRS454515"",""Vibrio harveyi E385"" | ATCC 33843 (392 [MAV]),""SRS736084"",""Vibrio harveyi ATCC 33843 (392 [MAV])"" | 823TEZ1 | CAUN,""ERS617242"",""VHJR4""",SAMN00752546 | SAMN02469604 | SAMN02469854 | SAMN02470649 | SAMD00036657 | SAMEA2272100 | SAMN02221893 | SAMN03075601 | SAMD00019140 | SAMEA3146286,PRJNA64027 | PRJNA78833 | PRJNA165825 | PRJNA187546 | PRJDB726 | PRJEB1547 | PRJNA210120 | PRJNA260398 | PRJDB3039 | PRJEB1546,GCA_000305715.2 | GCA_000259935.1 | GCA_000275705.1 | GCA_000347555.1 | GCA_000400305.1 | GCA_000442925.1 | GCA_000493315.1 | GCA_000770115.2 | GCA_000818375.1 | GCA_001050875.1,AJSQ00000000.1 | AHHQ00000000.1 | AKIH00000000.1 | AOMR00000000.1 | BAOD00000000.1 | CAUO00000000.1 | AYKI00000000.1 | BBKY00000000.1 | CAUN00000000.1,2005-07-18 | 2009 | 2009-10-01 | 2005,Mexico | Taiwan: Kaohsiung | Malaysia | China | Japan:Taisei,Penaeus vannamei | Epinephelus lanceolatus | Lates calcarifer | Epinephelus coioides,,diseased shrimp lesion | host heart tissue | cage-cultured | This is ATCC 33843 | host kidney tissue,
1481663,species,Vibrio metoecus,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio metoecus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,0.0,1,0,LOW,7.860185057472165,0,,,,,,False,,PDG000000128.13.metadata.tsv,36.0,RC341 | 06-2478 | 07-2435 | YB5B06 | YB4D01 | YB9D03 | YB5B04 | OYP9D09 | OYP9C12 | OYP9B09,"ACZT,""RC341"" | 06-2478,""Vibrio metoecus 06-2478"" | 07-2435,""Vibrio metoecus 07-2435"" | Vibrio meteocus YB5B06,""YB5B06"" | Vibrio meteocus YB4D01,""YB4D01"" | Vibrio meteocus YB9D03,""YB9D03"" | Vibrio meteocus YB5B04,""YB5B04"" | OYP9D09,""Vibrio metoecus OYP9D09"" | OYP9C12,""Vibrio metoecus OYP9C12"" | OYP9B09,""Vibrio metoecus OYP9B09""",SAMN02393823 | SAMN03610458 | SAMN03610459 | SAMN03488026 | SAMN03488024 | SAMN03488027 | SAMN03488025 | SAMN07350499 | SAMN07350498 | SAMN07350497,PRJNA40499 | PRJNA281423,GCA_000176215.1 | GCA_001402155.1 | GCA_001402165.1 | GCA_001402345.1 | GCA_001402495.1 | GCA_001402515.1 | GCA_001402675.1 | GCA_002283805.1 | GCA_002283835.1 | GCA_002283845.1,ACZT00000000.1 | LCUD00000000.1 | LCUE00000000.1 | LBGQ00000000.1 | LBGO00000000.1 | LBGR00000000.1 | LBGP00000000.1 | NMSJ00000000.1 | NMSK00000000.1 | NMSL00000000.1,1998 | 2006 | 2007 | 2009-08-01 | 2009-09-01 | 2009-09,"USA: Chesapeake Bay, MD | USA: Mississippi | USA: North Carolina | USA: Oyster Pond, MA | USA: MA",Homo sapiens,,stool | Leg wound | pond water | Oyster Pond,
674,species,Vibrio mimicus,1,8,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio mimicus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,1,0.0,11,3,MEDIUM,21.43544659621929,1,CHEMBL612621,Vibrio mimicus,ORGANISM,,,False,,PDG000000127.37.metadata.tsv,140.0,VM603 | VM573 | MB-451 | VM223 | SX-4 | CAIM 602 | 523-80 | FDAARGOS_113 | FDAARGOS_112 | SCCF01,"ACYU,""VM603"" | ACYV,""VM573"" | ADAF,""MB-451"" | ADAJ,""VM223"" | ADOO,""SX-4"" | AOMO,""CAIM 602"",""CAIM<MEX>:602"" | 523-80,""Vibrio cholerae 523-80"" | FDA:FDAARGOS_113,""FDAARGOS_113"",""SRS1134793"" | FDA:FDAARGOS_112,""FDAARGOS_112"",""SRS1134786"" | CVM2013034,""SCCF01""",SAMN02470247 | SAMN02470248 | SAMN02393827 | SAMN02393815 | SAMN02470633 | SAMN02469605 | SAMN02693882 | SAMN03996329 | SAMN03996328 | SAMN05356867,PRJNA40241 | PRJNA40243 | PRJNA40509 | PRJNA40483 | PRJNA47421 | PRJNA179483 | PRJNA242443 | PRJNA231221 | PRJNA327733,GCA_000175975.1 | GCA_000175995.1 | GCA_000176375.1 | GCA_000176415.1 | GCA_000222145.1 | GCA_000338875.1 | GCA_000736955.1 | GCA_001471395.2 | GCA_001558475.2 | GCA_001767355.1,ACYU00000000.1 | ACYV00000000.1 | ADAF00000000.1 | ADAJ00000000.1 | ADOO00000000.1 | AOMO00000000.1 | JIDP00000000.1 | LOSJ00000000.2,2009 | 1980 | 2013-08-26,Bangladesh: Matlab | Brazil: Sao Paulo | China | USA | USA: TN | USA:LA | China: Sichuan,Homo sapiens | bivalve | Environment | yellow catfish,Vibrio infection,diarrheal patient | Diarrhea | human | lake water,
650003,species,Vibrio paracholerae,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio paracholerae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,1,0,LOW,6.238324625039508,0,,,,,,False,,,,,,,,,,,,,,,
670,species,Vibrio parahaemolyticus,1,76,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,33,27,8.0,109,12,HIGH,54.56385597008631,1,CHEMBL614403,Vibrio parahaemolyticus,ORGANISM,,,False,,PDG000000023.1337.metadata.tsv,16849.0,AN-5034 | RIMD 2210633 | 10329 | BB22OP | SNUVpS-1 | CDC_K4557 | FDA_R31 | VP-NY4 | VP2007-095 | VP232,"ACFO,""AN-5034"" | RIMD 2210633,""RIMD:2210633"" | 10329,""SRS4293196"",""gb|AFBW00000000.1"" | BB22OP,""CP003973"" | AMRZ,""SNUVpS-1"" | CDC_K4557,""SRS454365"",""gen_001613"" | FDA_R31,""SRS454364"",""gen_001668"" | PVCHO_VP-NY4,""SRS431842"",""VP-NY4"" | PVCHO_VP2007-095,""SRS429967"",""VP2007-095"" | PVCHO_VP232,""SRS431843"",""VP232""",SAMN02436265 | SAMD00058707 | SAMN02952920 | SAMN02604302 | SAMN02470919 | SAMN02179884 | SAMN02179882 | SAMN02190055 | SAMN02183022 | SAMN02190056,PRJNA33625 | PRJNA360 | PRJNA46533 | PRJNA170885 | PRJNA175762 | PRJNA203445 | PRJNA176653 | PRJNA176627 | PRJNA176644,GCA_000182385.1 | GCA_000196095.1 | GCA_000195415.2 | GCA_000328405.1 | GCA_000315135.1 | GCA_000430425.1 | GCA_000430405.1 | GCA_000454145.1 | GCA_000454165.1 | GCA_000454185.1,ACFO00000000.1 | AFBW00000000.1 | AMRZ00000000.1 | AVON00000000.1 | AVOI00000000.1 | AVOJ00000000.1,2009-05-31 | 2006-09-19 | 2007-05-27,South Korea | USA:LA,Homo sapiens,,seafood (corb shell) | stool | oyster,O1:K33 | O1:Kuk
664643,species,Vibrio plantisponsor,1,1,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio plantisponsor,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,0,0,LOW,4.852030263919617,0,,,,,,False,,,,,,,,,,,,,,,
672,species,Vibrio vulnificus,1,145,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio vulnificus,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,42,21,6.0,210,60,HIGH,59.07991265251346,1,CHEMBL614404,Vibrio vulnificus,ORGANISM,,,False,,PDG000000058.474.metadata.tsv,3055.0,YJ016 | MO6-24/O | CMCP6 | B2 | ATCC 27562 | VVyb1(BT3) | JY1305 | 93U204 | VV9-09 | VV4-03,"BA000037-BA000038.AP005352,""YJ016"" | CP002469,""MO6-24/O"" | AE016795,""CMCP6"" | AMQR,""B2"" | AMQV,""ATCC 27562"",""ATCC:27562"" | AOCM,""VVyb1(BT3)"" | JY1305,""SRS172963"",""VVJY1305"" | 93U204,""Vibrio vulnificus 93U204"" | NB-VV-09,""VV9-09"" | NB-VV-03,""VV4-03""",SAMD00061075 | SAMN02603666 | SAMN02603130 | SAMN02471155 | SAMN02469425 | SAMN02471035 | SAMN00216032 | SAMN03009989 | SAMN02990644 | SAMN02990645,PRJNA1430 | PRJNA59881 | PRJNA349 | PRJNA174154 | PRJNA172642 | PRJNA46727 | PRJNA49015 | PRJNA256021 | PRJNA258249 | PRJNA258250,GCA_000009745.1 | GCA_000186585.1 | GCA_000039765.1 | GCA_000303175.1 | GCA_000299635.1 | GCA_000342305.2 | GCA_000269725.1 | GCA_000746665.1 | GCA_000743105.1 | GCA_000743095.1,AMQR00000000.1 | AMQV00000000.1 | AOCM00000000.1 | AFSW00000000.1 | JQDW00000000.1 | JQDV00000000.1,2010-10 | 1994-06 | 2004 | 2009 | 2003,China: Jiaxing | USA: Florida | Israel | Taiwan: Kaohsiung,Homo sapiens | tilapia fish | Oreochromis,septicemia | wound infection,blood | wound,
71667,species,Waddlia chondrophila,1,9,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Parachlamydiales; Waddliaceae; Waddlia; Waddlia chondrophila,no rank; cellular root; domain; kingdom; clade; phylum; class; order; family; genus; species,Bacteria,1,0,0.0,9,0,LOW,14.285514187210012,0,,,,,,False,,,,,,,,,,,,,,,
1583,species,Weissella confusa,1,3,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Weissella; Weissella confusa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,7,0,1.0,0,9,LOW,12.00664562083328,0,,,,,,False,,,,,,,,,,,,,,,
1629,species,Weissella viridescens,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Weissella; Weissella viridescens,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,0,0,0.0,0,1,LOW,0.6931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
33007,species,Winkia neuii,1,1,True,False,False,root; cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Winkia; Winkia neuii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,0.0,0,3,LOW,6.931471805599453,0,,,,,,False,,,,,,,,,,,,,,,
400946,species,Wohlfahrtiimonas chitiniclastica,1,8,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cardiobacteriales; Ignatzschineriaceae; Wohlfahrtiimonas; Wohlfahrtiimonas chitiniclastica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,0,0.0,10,7,MEDIUM,21.235955782583908,0,,,,,,False,,,,,,,,,,,,,,,
955,species,Wolbachia pipientis,1,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia; Wolbachia pipientis,no rank; cellular root; domain; kingdom; phylum; class; order; family; tribe; genus; species,Bacteria,3,5,0.0,12,0,MEDIUM,23.745202639471408,1,CHEMBL4649981,Wolbachia pipientis,ORGANISM,,,False,,,,,,,,,,,,,,,
339,species,Xanthomonas campestris,1,10,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas; Xanthomonas campestris,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,30,0,MEDIUM,24.101407828025184,1,CHEMBL612276,Xanthomonas campestris,ORGANISM,,,False,,,,,,,,,,,,,,,
347,species,Xanthomonas oryzae,1,4,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas; Xanthomonas oryzae,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,1,0.0,3,0,LOW,11.78350206951907,1,CHEMBL613861,Xanthomonas oryzae,ORGANISM,,,False,,,,,,,,,,,,,,,
2371,species,Xylella fastidiosa,1,8,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella; Xylella fastidiosa,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,1,3,0.0,12,0,MEDIUM,19.75621859290713,0,,,,,,False,,,,,,,,,,,,,,,
630,species,Yersinia enterocolitica,1,84,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia enterocolitica,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,107,35,8.0,67,74,HIGH,59.28855751795449,3,CHEMBL614398 | CHEMBL4404 | CHEMBL3341585,"Yersinia enterocolitica | Tyrosine-protein phosphatase YopH | Salicylate synthetase, Irp9",ORGANISM | SINGLE PROTEIN,,,False,,PDG000000087.729.metadata.tsv,7810.0,105.5R(r) | Y11 | PhRBD_Ye1 | WA-314 | IP 10393 | 556/8265 | 647/5307 | YO527 | NFO | IP2222,"105.5R(r),""CP002246"" | ERS379402,""GCA_000253175"",""Y11"" | AGQO,""PhRBD_Ye1"" | AKKR,""ATCC:51871"",""WA-314"" | ERS610365,""GCA_000330605"",""IP 10393"" | 556/8265,""ERS379785"",""GCA_000284935"" | 647/5307,""ERS379522"",""GCA_000284955"" | ERS379872,""GCA_000284975"",""YO527"" | ERS379636,""GCA_000284995"",""NFO"" | ERS379753,""GCA_000285015"",""IP2222""",SAMN02603637 | SAMEA2271938 | SAMN02404397 | SAMN02403951 | SAMEA3138430 | SAMEA2272355 | SAMEA2272063 | SAMEA2272449 | SAMEA2272185 | SAMEA2272317,PRJNA53341 | PRJEA60483 | PRJNA71137 | PRJNA167372 | PRJNA177695 | PRJEA61335 | PRJEA61337 | PRJEA61339 | PRJEA61955 | PRJEA61957,GCA_000192105.1 | GCA_000253175.1 | GCA_000230775.2 | GCA_000297175.1 | GCA_000330605.1 | GCA_000284935.1 | GCA_000284955.1 | GCA_000284975.1 | GCA_000284995.1 | GCA_000285015.1,AGQO00000000.1 | AKKR00000000.1 | CAOV00000000.1 | CACU00000000.1 | CACV00000000.1 | CACW00000000.1 | CACY00000000.1 | CACZ00000000.1,1972-11 | 1982,Philippines | France,swine | Homo sapiens,,blood,4/0:3
29484,species,Yersinia frederiksenii,1,3,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia frederiksenii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,3,0,1.0,2,1,LOW,13.117680429499949,0,,,,,,False,,,,,,,,,,,,,,,
631,species,Yersinia intermedia,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia intermedia,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,5,2,1.0,0,0,LOW,11.84916910403644,0,,,,,,False,,,,,,,,,,,,,,,
28152,species,Yersinia kristensenii,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia kristensenii,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,2.0,1,0,LOW,10.057409634808383,0,,,,,,False,,,,,,,,,,,,,,,
632,species,Yersinia pestis,2,65,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex; Yersinia pestis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,37,42,5.0,86,15,HIGH,54.51959323995504,9,CHEMBL3646 | CHEMBL614597 | CHEMBL1075037 | CHEMBL1287621 | CHEMBL1795082 | CHEMBL1795200 | CHEMBL2311235 | CHEMBL3308969 | CHEMBL3879849,Secreted effector protein | Yersinia pestis | Plasminogen activator | Fructose-bisphosphate aldolase class II | DNA topoisomerase | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | Threonine--tRNA ligase | AMP-binding enzyme family protein | Yersiniabactin biosynthetic protein,SINGLE PROTEIN | ORGANISM,,,False,dna_replication | protein_synthesis,,,,,,,,,,,,,,
633,species,Yersinia pseudotuberculosis,2,25,True,True,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex; Yersinia pseudotuberculosis,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species group; species,Bacteria,25,11,7.0,29,34,MEDIUM,45.20732415460979,1,CHEMBL613185,Yersinia pseudotuberculosis,ORGANISM,,,False,,,,,,,,,,,,,,,
158877,species,Yokenella regensburgei,1,2,True,False,False,root; cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yokenella; Yokenella regensburgei,no rank; cellular root; domain; kingdom; phylum; class; order; family; genus; species,Bacteria,2,0,1.0,4,5,LOW,15.619692547190889,0,,,,,,False,,,,,,,,,,,,,,,