.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover

# Environment variables
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# IDE files
.vscode/
.idea/
*.swp
*.swo
*~

# OS files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Application specific
.gradio/
.xraymodels/
*.log

# Test and debug files
test_*.py
debug_*.py
quick_*.py
comprehensive_*.py
*_test.py
*_debug.py

# Temporary files
*.tmp
*.temp
*.bak
*.backup
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
.xraymodels
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# VS Code
.vscode/
*.code-workspace

# PyCharm
.idea/

# Sublime Text
*.sublime-project
*.sublime-workspace

# Vim
*.swp
*.swo
*~

# Emacs
*~
\#*\#
/.emacs.desktop
/.emacs.desktop.lock
*.elc
auto-save-list
tramp
.\#*

# OS generated files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Windows
[Dd]esktop.ini
$RECYCLE.BIN/

# Machine Learning / AI specific
# Model checkpoints and weights
#*.pth
#*.pt
#*.ckpt
#*.h5
#*.hdf5
#*.pkl
#*.pickle
#*.joblib

# Datasets (add specific patterns if needed)
#data/
datasets/
*.csv
#*.json
*.jsonl
*.parquet

# Logs and outputs
logs/
output/
outputs/
results/
runs/
wandb/
mlruns/
tensorboard/

# Temporary files
tmp/
temp/
*.tmp
*.temp

# ONNX models (uncomment if you want to ignore them)
# *.onnx

# Specific to this project
# checkpoint-*/  # Uncomment if you want to ignore checkpoint directories