|
|
| --- |
| tags: |
| - bertopic |
| library_name: bertopic |
| pipeline_tag: text-classification |
| --- |
| |
| # short-pubmed-bertopic |
|
|
| This is a [BERTopic](https://github.com/MaartenGr/BERTopic) model. |
| BERTopic is a flexible and modular topic modeling framework that allows for the generation of easily interpretable topics from large datasets. |
|
|
| ## Usage |
|
|
| To use this model, please install BERTopic: |
|
|
| ``` |
| pip install -U bertopic |
| ``` |
|
|
| You can use the model as follows: |
|
|
| ```python |
| from bertopic import BERTopic |
| topic_model = BERTopic.load("etanios/short-pubmed-bertopic") |
| |
| topic_model.get_topic_info() |
| ``` |
|
|
| ## Topic overview |
|
|
| * Number of topics: 32 |
| * Number of training documents: 9999 |
|
|
| <details> |
| <summary>Click here for an overview of all topics.</summary> |
| |
| | Topic ID | Topic Keywords | Topic Frequency | Label | |
| |----------|----------------|-----------------|-------| |
| | -1 | patients - activity - cells - acid - 10 | 53 | Medical research studies | |
| | 0 | health - children - care - medical - patient | 3897 | Healthcare and Mental Health | |
| | 1 | renal - pressure - renin - blood - sodium | 702 | Renal physiology and hypertension | |
| | 2 | progesterone - pregnancy - lh - testosterone - fetal | 516 | Reproductive physiology and endocrinology | |
| | 3 | ventricular - coronary - left - patients - myocardial | 404 | Cardiac physiology and anatomy | |
| | 4 | method - gas - liquid - chromatography - urine | 381 | Analytical techniques for chemical analysis | |
| | 5 | morphine - mg kg - kg - brain - mg | 296 | Effects of drugs on rat behavior | |
| | 6 | cells - tumor - mice - cell - lymphocytes | 281 | Tumor immunology and lymphocyte activation | |
| | 7 | hip - patients - joint - rheumatoid - knee | 278 | Hip and Knee Fractures in Rheumatoid Arthritis Patients | |
| | 8 | cells - electron - cell - axons - synaptic | 265 | Neuroanatomy and Synaptic Structures | |
| | 9 | retinal - eyes - vitreous - eye - cases | 237 | Ocular Surgery | |
| | 10 | patients - ulcer - cases - disease - crohn | 203 | Gastrointestinal surgery and complications | |
| | 11 | strains - resistant - antibiotic - gentamicin - antibiotics | 201 | Antibiotic resistance in bacterial strains | |
| | 12 | enzyme - molecular - acid - activity - phosphate | 201 | Enzymology and Molecular Biology | |
| | 13 | iron - hemoglobin - hb - erythrocytes - deficiency | 178 | Iron Deficiency Anemia Research | |
| | 14 | infection - virus - infected - vaccinated - cattle | 175 | Virus infection and vaccination studies | |
| | 15 | platelet - platelets - aggregation - fibrinogen - coagulation | 167 | Platelet function and coagulation | |
| | 16 | cancer - carcinoma - patients - tumor - cases | 158 | Cancer treatment and survival rates | |
| | 17 | lung - volume - oxygen - flow - ventilation | 152 | Pulmonary Function and Exercise | |
| | 18 | calcium - thyroid - t3 - parathyroid - t4 | 151 | Thyroid and Parathyroid Hormones | |
| | 19 | fatty - cholesterol - acid - liver - acids | 144 | Lipid metabolism in rats | |
| | 20 | diet - weight - egg - diets - fed | 117 | Poultry Nutrition and Physiology | |
| | 21 | stimulation - nerve - neurons - units - motor | 111 | Motor Neuron Discharge and Potentials | |
| | 22 | glucose - insulin - glucagon - levels - blood glucose | 102 | Insulin and glucose metabolism | |
| | 23 | hearing - ear - cochlear - auditory - noise | 99 | Hearing and Auditory Function | |
| | 24 | rna - dna - chromatin - proteins - polymerase | 95 | | |
| | 25 | carotid - artery - intracranial - aneurysms - subdural | 94 | Carotid Artery Aneurysms and Intracranial Hemorrhage | |
| | 26 | bone - mineral - fluoride - enamel - mineralization | 81 | Bone and Mineral Metabolism | |
| | 27 | temperature - degrees - heat - temperatures - cold | 75 | Effects of Temperature on Human Physiology | |
| | 28 | bile - acid - biliary - cholesterol - bile acid | 63 | Biliary Lipid Metabolism | |
| | 29 | visual - light - receptive - sensitivity - dark | 61 | Visual processing and sensitivity | |
| | 30 | lung - pulmonary - chest - pleural - patients | 61 | Respiratory system diseases and disorders | |
| |
| </details> |
|
|
| ## Training hyperparameters |
|
|
| * calculate_probabilities: False |
| * language: None |
| * low_memory: False |
| * min_topic_size: 10 |
| * n_gram_range: (1, 1) |
| * nr_topics: None |
| * seed_topic_list: None |
| * top_n_words: 10 |
| * verbose: True |
| |
| ## Framework versions |
| |
| * Numpy: 1.23.5 |
| * HDBSCAN: 0.8.33 |
| * UMAP: 0.5.4 |
| * Pandas: 1.5.3 |
| * Scikit-Learn: 1.2.2 |
| * Sentence-transformers: 2.2.2 |
| * Transformers: 4.33.2 |
| * Numba: 0.56.4 |
| * Plotly: 5.15.0 |
| * Python: 3.10.12 |
| |
